View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9154_high_1 (Length: 525)
Name: NF9154_high_1
Description: NF9154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9154_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 5174362 - 5173853
Alignment:
| Q |
1 |
cataaattatcctaggatctatatcatcgttcttaaaggtggtaacgtgagagccaaggattattgtagacctattcatatgtcattatttgccttcatt |
100 |
Q |
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| T |
5174362 |
cataaattatcctaggatctatatcatcgttcttaaaggtggtaacgtgagagccaaggattattgtagacctattcatatgtcattatttgccttcatt |
5174263 |
T |
|
| Q |
101 |
tattttataattaaagttctaaattggggactataaccatattataatgtaacaaacaatcaaaacaggacaacttttgcataagattatcagtttgtca |
200 |
Q |
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| T |
5174262 |
tattttataattaaagttctaaattggggactaaaaccatattataatgtaacaaacaatcaaaacaggacaacttttgcataagattatcagtttgtca |
5174163 |
T |
|
| Q |
201 |
ccttttcataactgctatgcgatgataatataacataattagttgtccaaaacactacacaacatatattaatttcataacaatacagcttgtctccttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5174162 |
ccttttcataactgctatgcgatgataatataacataattagttgtccaaaacactacataacatatattaatttcataacaatacagcttgtctccttt |
5174063 |
T |
|
| Q |
301 |
gtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaaataaattatgtgcatacactccaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5174062 |
gtaaaacctttaactttgtgtcgatatcaacaatacggcctgcaattgtgacattctaatatatatactcacaaaattaaattatgtgcatacactccaa |
5173963 |
T |
|
| Q |
401 |
aaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatgga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173962 |
aaacacttgaatgaaatgactcgggtctcttacaacataacataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatgga |
5173863 |
T |
|
| Q |
501 |
gagttgtatc |
510 |
Q |
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| T |
5173862 |
gagttgtatc |
5173853 |
T |
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