View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9154_low_4 (Length: 514)
Name: NF9154_low_4
Description: NF9154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9154_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 38065174 - 38065001
Alignment:
| Q |
26 |
tgaactcaaaatagaccccagtgacataataaaatgagcaaagtaacaccaaaaaatattcaacatagaaaaaccttctcaaagtgaacgggatcagtag |
125 |
Q |
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| T |
38065174 |
tgaactcaaaataaaccctagtgacataataaaatgagcaaagtaacaccaaaaaatattcaacatagaaaaaccttctcaaagtgaacgggatcagtag |
38065075 |
T |
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| Q |
126 |
gccacttaaacttccaccgtacataatgagaacataaaaacttcacacattagtgggtataatttttccctcac |
199 |
Q |
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| T |
38065074 |
gccacttaaacttccaccgtacataatgggaacataaaaacttcacacattagtgggtataatttttccctcac |
38065001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 38064909 - 38064848
Alignment:
| Q |
291 |
gttgatatttgtcatttacgtgcatattacaatttacattagtaagtcttgtatgattataa |
352 |
Q |
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| T |
38064909 |
gttgatatttgtcatttacgtgcattttacaatttacattagtaagtcttttatgattataa |
38064848 |
T |
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