View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9154_low_5 (Length: 350)

Name: NF9154_low_5
Description: NF9154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9154_low_5
NF9154_low_5
[»] chr3 (3 HSPs)
chr3 (13-350)||(49277328-49277665)
chr3 (140-350)||(49271538-49271748)
chr3 (168-300)||(49269115-49269250)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 49277328 - 49277665
Alignment:
Q  13 cacagataaatttgagacagatagtagacataaaggttgaatttcatttcacttatgacaagaaagggtggcaaatcttaaaacataacaagtactctct 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49277328 cacagataaatttgagacagatattagacataaaggttgaatttcatttcacttatgacaagaaagggtggcaaatcttaaaacataacaagtactctct 49277427  T
Q  113 aaccacaaatacaatgtgtcaaactagacaccgctgaaatcttgattcttgttctgagtaaaagtggaagccttctgaaatctaacataataaggttctt 212  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49277428 aaccacaaatacaatgtgccaaactagacaccgctgaaatcttgattcttgttctgagtaaaagtggaagccttctgaaatctaacataataaggttctt 49277527  T
Q  213 caataccagcaccaagagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagagtaccaggaacagaagggcagtacagaaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49277528 caataccagcaccaagagccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagagtaccaggaacagaaggacagtacagaaa 49277627  T
Q  313 gctataaatctcacaagcatgttctccctcaagcctct 350  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  49277628 gctataaatctcataagcatgttctccctcaagcctct 49277665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 140 - 350
Target Start/End: Original strand, 49271538 - 49271748
Alignment:
Q  140 acaccgctgaaatcttgattcttgttctgagtaaaagtggaagccttctgaaatctaacataataaggttcttcaataccagcaccaagagccataactt 239  Q
    |||| ||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  49271538 acactgctcaaatcttgattattgctctgagcaaaagtggaagccttctgaaatctaacatagtaaggttcttcaataccatcaccaacagccataactt 49271637  T
Q  240 tagttccatcagtatctacaaaagttccaacaggagcacaaagagtaccaggaacagaagggcagtacagaaagctataaatctcacaagcatgttctcc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| || ||| ||  ||||||||| |||||| |||||||||| ||    
T  49271638 tagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacc 49271737  T
Q  340 ctcaagcctct 350  Q
      |||||||||    
T  49271738 tgcaagcctct 49271748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 49269115 - 49269250
Alignment:
Q  168 gagtaaaagtggaagccttctgaaatctaacataataaggttct---tcaataccagcaccaagagccataactttagttccatcagtatctacaaaagt 264  Q
    |||||||||||||| || ||||||| |||||||||||||||||    ||| ||||| |||||| ||||||||||||||||||||| ||||||   |||||    
T  49269115 gagtaaaagtggaaaccctctgaaacctaacataataaggttcaagatcattaccatcaccaacagccataactttagttccatcggtatctgtgaaagt 49269214  T
Q  265 tccaacaggagcacaaagagtaccaggaacagaagg 300  Q
    || |||||||||||| | || |||||||||||||||    
T  49269215 tcgaacaggagcacataaagcaccaggaacagaagg 49269250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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