View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9155_low_1 (Length: 423)
Name: NF9155_low_1
Description: NF9155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9155_low_1 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 7710189 - 7709768
Alignment:
| Q |
1 |
ttcaatgaccattgtaaaatcatcagatggatagctcttggagaatttatattaaaggtaacattagatacacaatctattgaatagagaaagcaaacat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7710189 |
ttcaatgaccattggaaaatcttcagatggatagctcttggagaatttatattacaggtaacattagatacacaatctattgaatagagaaagcaaacat |
7710090 |
T |
|
| Q |
101 |
atacaaattttggcacatttctttatattgaaatctcaaatcattcaaatttttcttgattatttttcttgttttcattctcagattattgctttgattc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7710089 |
atacaaattttggtacatttctttatattgaaatctcaaatcattcaaatttttcttgattatttt-cttgttttcattctcagattattgctttgattc |
7709991 |
T |
|
| Q |
201 |
tggcgatatatttgcgatctgtgttcagttgcgcatgttatgacagtgatgacgagcgtgtacaagatttcctgcgttctagaaaacaaagttacaatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709990 |
tggcgatatatttgcgatctgtgttcagttgcgcatgttatgacagtgatgacgagcgtgtacaggatttcctgcgttctagaaaacaaagttacaatag |
7709891 |
T |
|
| Q |
301 |
gctgggcgcgacaactcacgccgccactcaatcaaggagttctattcgtctcggtgttcatgccaatgctagagattcaacacagcctgctagcccgtca |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709890 |
gctgggcgcggcaactcacgccgccactcgatcaaggagttctattcgtctcggtgttcatgccaatgctagagattcaacacagcctgctagcccgtca |
7709791 |
T |
|
| Q |
401 |
aataccgctgtcaatgtcaatgc |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7709790 |
aataccgctgtcaatgtcaatgc |
7709768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 7709719 - 7709661
Alignment:
| Q |
364 |
caatgctagagattcaacacagcctgctagcccgtcaaataccgctgtcaatgtcaatg |
422 |
Q |
| |
|
||||||||||||| ||||| |||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
7709719 |
caatgctagagatgcaacaaagcccgctagctcgtcaaataccgctgccaatgtcaatg |
7709661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 7709773 - 7709714
Alignment:
| Q |
364 |
caatgctagagattcaacacagcctgctagcccgtcaaataccgctgtcaatgtcaatgc |
423 |
Q |
| |
|
||||||||||||||||||| | | |||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
7709773 |
caatgctagagattcaacaaatctcgctagctcgtcaactaccgttgtcaatgtcaatgc |
7709714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University