View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9155_low_3 (Length: 370)
Name: NF9155_low_3
Description: NF9155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9155_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 43157621 - 43157271
Alignment:
| Q |
11 |
gattatactaa-gtgtatcatttgcttcaagaggtcttatagattcgatcttcgaccctatttataaaatattgaataaaagacatgttgatatgaagtt |
109 |
Q |
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| T |
43157621 |
gattatactaaagtgtatcatttgcttcaagaggtcttatagattccatcttcgaccctatttgtaaaatattgaataaaagacatgctgatatgaattt |
43157522 |
T |
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| Q |
110 |
aagagtttgattgagtttatcgcaacattcctttaatcaacttgaagtaatcatatttgaggtgtgttgaatnnnnnnngtgtgtatatcatacattcaa |
209 |
Q |
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| T |
43157521 |
aagagtttgattgagtttatcgcaacattcctttaatcaacttgaagtaatcatatttgaggtgtgttgaataaaaaaagtgtgtatctcatatattcaa |
43157422 |
T |
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| Q |
210 |
gattgagctttgatttgtcacattgtaagaatctacggttcattcaactagactcaactccgttggttctaattacacctcgttaattaaatatttgtgt |
309 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43157421 |
gattgagctttgatttgtcacattgtgagaatctatagttcattcaactagactcaactccgttggttctaattacacctcgttaattaaatatttgtgt |
43157322 |
T |
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| Q |
310 |
gccta--ttgagaaatatattattgaaagtttatttaaagtaaaaatgatg |
358 |
Q |
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| T |
43157321 |
gcctattttgagaaatatattattgaaagtttatttaaagtaaaaatgatg |
43157271 |
T |
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