View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9155_low_5 (Length: 346)
Name: NF9155_low_5
Description: NF9155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9155_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 10760678 - 10760356
Alignment:
| Q |
9 |
tggtgttgtcgtgatcgaagagagcttcgtagactagtggttcccaattatggattgacgacttttttattttaatgggaccgttggattttatcataag |
108 |
Q |
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| T |
10760678 |
tggtgttgtcgcgatcgaagagagcttcgtagactagtggttcccaattatggattgacgacttttttatttgaatgggaccgttggattttatcataag |
10760579 |
T |
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| Q |
109 |
tgatatattatcgccacgtggagggattggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggtttt |
208 |
Q |
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| T |
10760578 |
tgatatattctcaccacgtggagggattggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggtttt |
10760479 |
T |
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| Q |
209 |
gagtcatcatctgaagagtaaacacattgaaggtcatgtttggtgtgatagcgaaaagataaagggtagtttaagaacattaaaacatgatcaggaagca |
308 |
Q |
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| T |
10760478 |
gagtcatgatctgaagagtaaacacattgaaggtcacgtttggtgtgatagcgaaaagataaagggtagtttaagaaaattaaaacatgatcaggaagca |
10760379 |
T |
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| Q |
309 |
taactgtttcccgaattgtgatt |
331 |
Q |
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| T |
10760378 |
aaactgtttcccgaattgtgatt |
10760356 |
T |
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