View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9155_low_7 (Length: 242)
Name: NF9155_low_7
Description: NF9155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9155_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27523986 - 27524223
Alignment:
| Q |
1 |
tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27523986 |
tagaatggtttatgttgatcaattgttatccatagccatgtagacacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatg |
27524085 |
T |
|
| Q |
101 |
tttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggtt--------gcacatctcatttggtagcaagtggaagctttgtattggaca |
192 |
Q |
| |
|
||| | ||||||||| | |||||||||||||| || |||||||| ||| ||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
27524086 |
tttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcacttgagcacatctcatttggtagcaattggaagctttgtattggata |
27524185 |
T |
|
| Q |
193 |
ttgtttaagaaggtagggtacactcttagacaacacca |
230 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27524186 |
ttgtttaagaaggtagggtacactctaagacaacacca |
27524223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27514355 - 27514584
Alignment:
| Q |
1 |
tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatg |
100 |
Q |
| |
|
||||||||||| ||||| | ||||||||| || || | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27514355 |
tagaatggtttatgttgttatattgttatctatggcattatagtcacttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatg |
27514454 |
T |
|
| Q |
101 |
tttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcacatctcatttggtagcaagtggaagctttgtattggaca-ttgttta |
199 |
Q |
| |
|
||| || |||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27514455 |
tttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg-acatctcatttggtagcaagtggaagctttgtattggacatttgttta |
27514553 |
T |
|
| Q |
200 |
agaaggtagggtacactcttagacaacacca |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27514554 |
agaaggtagggtacactcttagacaacacca |
27514584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 27469015 - 27468777
Alignment:
| Q |
1 |
tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatg |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27469015 |
tagaatggtttgagttgatctattgttatccatggccttatagtcacttaccagcttcacatcggcattatcataatgaagaaaacatgtctgaagcatg |
27468916 |
T |
|
| Q |
101 |
tttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggtt--------gcacatctcatttggtagcaagtggaagctttgtattggaca |
192 |
Q |
| |
|
||| || |||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27468915 |
tttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttgagcacatctcatttggtagcaagtggaagctttgtattggaca |
27468816 |
T |
|
| Q |
193 |
-ttgtttaagaaggtagggtacactcttagacaacacca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27468815 |
tttgtttaagaaggtagggtacactcttagacaacacca |
27468777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 27503399 - 27503622
Alignment:
| Q |
13 |
tgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacatta |
112 |
Q |
| |
|
|||||||| |||||||||||| ||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||| |
|
|
| T |
27503399 |
tgttgatctattgttatccattgccttatagtcacttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaatta |
27503498 |
T |
|
| Q |
113 |
tgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aa |
203 |
Q |
| |
|
| || | ||||||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
27503499 |
t---tgacgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaa |
27503595 |
T |
|
| Q |
204 |
ggtagggtacactcttagacaacacca |
230 |
Q |
| |
|
||||||| ||||||| ||||||||||| |
|
|
| T |
27503596 |
ggtaggggacactctaagacaacacca |
27503622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27476245 - 27476011
Alignment:
| Q |
1 |
tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatg |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| || | |||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27476245 |
tagaatggtttatgttgatctattgttatccatgtccttagagtcacataccagcttcacatcggcattatcataatgaagaaaacatgtctgaagcatg |
27476146 |
T |
|
| Q |
101 |
tttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatttggtagcaagtggaagctttgtattggaca |
192 |
Q |
| |
|
|| || ||||| || | ||||||||||| ||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
27476145 |
cttacaaaattat---tgacgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttattttttagcaagtggaagctttgtattggaca |
27476049 |
T |
|
| Q |
193 |
ttgtttaag-aaggtagggtacactcttagacaacacc |
229 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
27476048 |
ttgtttaggaaaggtagggtacactctaagacaacacc |
27476011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 27508370 - 27508486
Alignment:
| Q |
1 |
tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
27508370 |
tagaatggtttctgttgatctattgttatctatggccttatagtcacttactagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatg |
27508469 |
T |
|
| Q |
101 |
tttcaaacattatgaag |
117 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
27508470 |
tttataaaattatgaag |
27508486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 27508488 - 27508565
Alignment:
| Q |
153 |
acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
27508488 |
acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcacca |
27508565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27557076 - 27556974
Alignment:
| Q |
1 |
tagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatg |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| || | || |||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
27557076 |
tagaatggtttatgttgatctattgttatccattgcgttataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaagcatg |
27556977 |
T |
|
| Q |
101 |
ttt |
103 |
Q |
| |
|
||| |
|
|
| T |
27556976 |
ttt |
27556974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27497966 - 27497875
Alignment:
| Q |
1 |
tagaatggtttctgttgatcaattgttatccatagccatgtag-tcacttaccagctggacatcagcattatcataatgaagaaaacatgtc |
91 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||| | || ||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
27497966 |
tagaatggtttatgttgatctattgttatccactgccttatatctcacttaccagctagacatcaacattatcataatgaagaaaacatgtc |
27497875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 27489616 - 27489723
Alignment:
| Q |
44 |
tcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaata |
143 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||| |||| ||||||||| ||| || ||||| |
|
|
| T |
27489616 |
tcactaaccagctggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaata |
27489713 |
T |
|
| Q |
144 |
tgaggttgca |
153 |
Q |
| |
|
|||||||||| |
|
|
| T |
27489714 |
tgaggttgca |
27489723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 27506260 - 27506325
Alignment:
| Q |
53 |
agctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagt |
118 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||||| || ||||||| || |||||||||| |
|
|
| T |
27506260 |
agctggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt |
27506325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 27517369 - 27517433
Alignment:
| Q |
156 |
tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactctta |
220 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||| |||||||| ||||||| ||||||| ||||| |
|
|
| T |
27517369 |
tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatctta |
27517433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 27479464 - 27479414
Alignment:
| Q |
53 |
agctggacatcagcattatcataatgaagaaaacatgtctaaagcatgttt |
103 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
27479464 |
agctggacatcagcaccatgataatgaagaaaacatgtctgaaacatgttt |
27479414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 27554174 - 27554101
Alignment:
| Q |
46 |
acttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtac |
120 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||| |||||||||| | ||||||| || |||||||||||| |
|
|
| T |
27554174 |
acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaagtac |
27554101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University