View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9155_low_9 (Length: 223)
Name: NF9155_low_9
Description: NF9155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9155_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 44878481 - 44878278
Alignment:
| Q |
1 |
gttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatcgcttctgctcagcagaggcttaagcttt |
100 |
Q |
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| T |
44878481 |
gttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatcgcttctgctcaaaagaggcttaagcttt |
44878382 |
T |
|
| Q |
101 |
ataacaaggttcctccaaatgggcttgttttgtatactggcacaattgtgatggcaggagaaaaaggtgaccgttgatttggaaccatttagacctatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44878381 |
ataacaaggttcctccaaatgggcttgttttgtatactggcacaattgtgatggcaggagaaaaaggtgaccgttgatttggaaccatttagacctatca |
44878282 |
T |
|
| Q |
201 |
atgt |
204 |
Q |
| |
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|||| |
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| T |
44878281 |
atgt |
44878278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 28920568 - 28920775
Alignment:
| Q |
2 |
ttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatcgcttctgctcagcagaggcttaagcttta |
101 |
Q |
| |
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|||| |||||||||||||||||||||||||| || |||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28920568 |
ttggcgatgagtttggaactgcttcaaacatcaagagtagggtgaatcgacagtctgtgcttggtgcaatcacttctgctcagcagaggcttaagcttta |
28920667 |
T |
|
| Q |
102 |
taacaaggttcctccaaatgggcttgttttgtatactggcacaattg-------tgatgg-caggagaaaaaggtgaccgttgatttggaaccatttaga |
193 |
Q |
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| T |
28920668 |
taacaaggtccctccaaacgggcttgttttgtatactggtacaattgtgactgatgatggtaaggagaaaaaggtgaccattgattttgaaccatttaga |
28920767 |
T |
|
| Q |
194 |
cctatcaa |
201 |
Q |
| |
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|||||||| |
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| T |
28920768 |
cctatcaa |
28920775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 42891257 - 42891460
Alignment:
| Q |
8 |
atgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatcgcttctgctcagcagaggcttaagctttataacaa |
107 |
Q |
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|||||| |||||||||||||||||| ||||||| || ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
42891257 |
atgagtatggaactgcttcaaacatcaaaagtagggtgaatcgacagtctgtgcttggtgcaatcagttctgcccagcagaggcttaagctttataacaa |
42891356 |
T |
|
| Q |
108 |
ggttcctccaaatgggcttgttttgtatactggcacaattgtga-tg-------gcaggagaaaaaggtgaccgttgatttggaaccatttagacctatc |
199 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| ||| || | |||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
42891357 |
ggttcctccaaatgggcttgttttgtattgtggcacaattttgactgatgatgagaaggagaaaaaggagacctttgattttgaaccatttagacctatc |
42891456 |
T |
|
| Q |
200 |
aatg |
203 |
Q |
| |
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|||| |
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|
| T |
42891457 |
aatg |
42891460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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