View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9156_high_2 (Length: 512)
Name: NF9156_high_2
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9156_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 2360879 - 2361348
Alignment:
| Q |
17 |
caatatcaccatagaacatgctctctgagaatccattgaagttgtaaaatgcatcatttgcttgtgaagaatcttgaaaatcaaactgtatatcacttgg |
116 |
Q |
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| T |
2360879 |
caatatcaccatataacatgctctctgagaatccattgaagttgtaaaatgcatcatttgcttgtgaagaatcttgaaaatcaaactgtatatcacttgg |
2360978 |
T |
|
| Q |
117 |
aattgaaaacattgattcagattcagctacttcttcagaagatgaacaacattgaagaactgaagtaggagaaaataaactcttattattattgttttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2360979 |
aattgaaaacattgattcagattcagctacttcttcagaagatgaacaacattgaagaactgaagtaggagaaaataaactcttattattattgttttga |
2361078 |
T |
|
| Q |
217 |
gattgtgattgagattgagattcttcaccggagtttgccggtaacggtaatgacggaagaggaatttcattttccggtggtggtgatgataactgacacg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2361079 |
------------gattgagattcttcaccggagtttgccggtaacggtaatgacgaaagaggaatttcattttccggtggtggtgatgataactgacacg |
2361166 |
T |
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| Q |
317 |
tggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2361167 |
tggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagc |
2361266 |
T |
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| Q |
417 |
cgtttgaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgcccattttccccatggtctctgc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2361267 |
cgtttgaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgcccattttccccatggtctctgc |
2361348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 497
Target Start/End: Complemental strand, 41747998 - 41747958
Alignment:
| Q |
457 |
gggtctcttatctccgccgcccattttccccatggtctctg |
497 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
41747998 |
gggtctcttatctccgccgcccattttccccaaggtctctg |
41747958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 41197611 - 41197538
Alignment:
| Q |
358 |
gcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagccgtttgaaatgtacc |
431 |
Q |
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| T |
41197611 |
gcgtctggtccacgaagcttaatagcggcattgtcataaaccatagcagcttcttctgcagtttcaaaagtacc |
41197538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 43490153 - 43490190
Alignment:
| Q |
460 |
tctcttatctccgccgcccattttccccatggtctctg |
497 |
Q |
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||||||||||| || ||||||||||||||||||||||| |
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| T |
43490153 |
tctcttatctctgctgcccattttccccatggtctctg |
43490190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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