View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9156_high_3 (Length: 455)
Name: NF9156_high_3
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9156_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 27988942 - 27988685
Alignment:
| Q |
9 |
acatcatcaattacactatgtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattctt |
108 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27988942 |
acatcattcattacactacgtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattctt |
27988843 |
T |
|
| Q |
109 |
cgaccaaacagtgaagtagtgacacatatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaacca |
208 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
27988842 |
cggccaaacagtgaagtcactacacataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaacca |
27988743 |
T |
|
| Q |
209 |
atatcaaatacagaaagctcgtactgaaattcacaaaatgcatcaattatgaaaaccg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27988742 |
atatcaaatacagaaagctcgtactgaaattcacaaaatgcatcaattatgaaaaccg |
27988685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 28075475 - 28075218
Alignment:
| Q |
9 |
acatcatcaattacactatgtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattctt |
108 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28075475 |
acatcattcattacactacgtagggtaccgcgtaacaatttgtgagtaataaccaattgattcggtaactcataagaattcttcaaccatgattattctt |
28075376 |
T |
|
| Q |
109 |
cgaccaaacagtgaagtagtgacacatatgaatcttagaatcaatttcatgagaatgaacctatnnnnnnnggaggaattattagaaacattagaaacca |
208 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
28075375 |
cggccaaacagtgaagtcactacacataagaatcttagaatcaatttcatgagaatgaacctataaaaaaaggagaaattattagaaacattagaaacca |
28075276 |
T |
|
| Q |
209 |
atatcaaatacagaaagctcgtactgaaattcacaaaatgcatcaattatgaaaaccg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28075275 |
atatcaaatacagaaagctcgtactgaaattcacaaaatgcatcaattatgaaaaccg |
28075218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 17765495 - 17765552
Alignment:
| Q |
348 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
405 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||| |||||||||||||||| |
|
|
| T |
17765495 |
acttttatgtatgggcatcggttgaaaattttgtattcttgtcaggaccttgttcttt |
17765552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 26771519 - 26771576
Alignment:
| Q |
348 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
405 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
26771519 |
acttttatgtatgagcatcgactgaaaactttgtgttcttgacaggaccttgttcttt |
26771576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 32536502 - 32536445
Alignment:
| Q |
348 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
405 |
Q |
| |
|
||||||||||||| |||| ||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
32536502 |
acttttatgtatgagcattgactgaaaactttgtattcttgataggaccttgttcttt |
32536445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 15959347 - 15959404
Alignment:
| Q |
348 |
acttttatgtatgggcatcgacgggaaactttgtattcttgacaggaccttgttcttt |
405 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
15959347 |
acttttatgtatgggcatcgactaaaaactttttattcttgactaaaccttgttcttt |
15959404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University