View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9156_low_1 (Length: 917)
Name: NF9156_low_1
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9156_low_1 |
 | |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 577; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 173 - 904
Target Start/End: Original strand, 3226279 - 3227007
Alignment:
| Q |
173 |
gcttataaatgccaaggtcttgagattagtttaatctcttaatgcacaagaccttggtaaagcttataccaatcaaaagcaagtaagtatggaccttggc |
272 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3226279 |
gcttataaatgccaaggtcttgagattagtttaatctcttaatgcacaagaccttggtaaagcttataccaatcaaaagcaagtaagtatggaccttggc |
3226378 |
T |
|
| Q |
273 |
ataatccttggtttgtgttcattttatggagtacaaatttgggaatggttaaagaatcaatggcagtccttaaaagtttgaagagtgattctaaatttag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3226379 |
ataatccttggtttgtgttcattttatggagtacaaatttgggaatggttaaagaatcaatggcagtccttaaaagtttgaagagtgattctaaatttag |
3226478 |
T |
|
| Q |
373 |
caacggaaaagatggacaacctttgtgtatttttaaggataattgtgtccaccaaaactttaggctattaatagatgaaaggtctaaactaaagggagtt |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3226479 |
caacggaaaagatggacaacctttgtgtatttttaaggataattgtgtccaccaaaactttaggctattaatagatgaaaggtctaaattaaagggagtt |
3226578 |
T |
|
| Q |
473 |
aatatcgactttgaattttgnnnnnnnnnntgaaattattgacaatccttaaaccttttacttggacaaagtcttattattacatcgttgtccaagtgtt |
572 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3226579 |
aatatcgactttgaattttgaaaaaaaaaatgaaattattgacaatccttaaaccttttacttggacaaagtcttattattacatcgttgtccaagtgtt |
3226678 |
T |
|
| Q |
573 |
ttggcaattttcaagccttattaatttagcatgaattgtaannnnnnnnatagcatgactttgtcgatgtatatcatgtgtatattatattattttggtc |
672 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3226679 |
ttggcaattttcaagccttattaatttagcatgaattgtaattttttttatagcatgactttgtcgatgtatatcatgtgtatattatactattttggtc |
3226778 |
T |
|
| Q |
673 |
aaaatcaatgatacttaattacaatgccagcccaacacattttgaggcctaaagtattacgaaattatatggaaaagtgttgaacccatattgtaagctc |
772 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||| | |
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| T |
3226779 |
aaaatcaatgatacttaattacaatgccggcccaacacattttgaggcctaaagtattatgaaattgtatggaaaaatgttgaacccatgctgtaagcac |
3226878 |
T |
|
| Q |
773 |
cataaagtctcacgtctaccatctttgctttatgacaaattaaagttgcataattcatttgttatgtgatctttatttgtttg--tatatatacataaat |
870 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||| |
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| T |
3226879 |
cataaagtctcgagtctaccatctttgcttcatgac-----aaagttgtataattcatttgttatgtgacctttattcttttgtatatatatacacaaat |
3226973 |
T |
|
| Q |
871 |
ttgtcttttgtaaggcctttattctaactccaaa |
904 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
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|
| T |
3226974 |
ttgtctattgtaaggcctttattctaactccaaa |
3227007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3226107 - 3226164
Alignment:
| Q |
1 |
aggcatggaatagtaatggcgaaagtaaccaagagaataaaagcaatcttggtagaac |
58 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3226107 |
aggcatggaatagtaatggcgaaagtaaccaagagaataaaagcaatcttggtagaac |
3226164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3221264 - 3221321
Alignment:
| Q |
1 |
aggcatggaatagtaatggcgaaagtaaccaagagaataaaagcaatcttggtagaac |
58 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
3221264 |
aggcatggaatagtaatggcgaaagtaaccaagaaaataaatgcaatcttagtagaac |
3221321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 237 - 383
Target Start/End: Original strand, 3221457 - 3221604
Alignment:
| Q |
237 |
tataccaatcaaaagcaagtaagtatggaccttggcataatccttggtttgtgttcattttatggagtacaaatttgggaatggttaaagaatcaatggc |
336 |
Q |
| |
|
||||||||||||| ||||| | | |||||||| | ||||||||||||||||||| ||| || ||||| |||||| || ||||||||| || ||||||| |
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| T |
3221457 |
tataccaatcaaacccaagttaatttggaccttagaataatccttggtttgtgtt-gtttgatagagtataaatttagggatggttaaataaacaatggc |
3221555 |
T |
|
| Q |
337 |
agtccttaaaagtttgaagag--tgattctaaatttagcaacggaaaag |
383 |
Q |
| |
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| ||||| ||||||||| | | ||||||||||||||||| ||||||| |
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| T |
3221556 |
attccttgaaagtttgatgggtttgattctaaatttagcattggaaaag |
3221604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 747 - 904
Target Start/End: Original strand, 10329167 - 10329323
Alignment:
| Q |
747 |
aagtgttgaacccatattgtaagctccataaagtctcacgtctaccatctttgctttatgacaaattaaagttgcataattcatttgttatgtgatcttt |
846 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||| || | |||||||||||||||| |||||||| | || |||||||||||||| |||| |||| |
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| T |
10329167 |
aagtgttaaacccatgttgtaagcatcataaagcatcgcatctaccatctttgcttcatgacaaaat-----tgtataattcatttgttgtgtggccttt |
10329261 |
T |
|
| Q |
847 |
atttgtttgta----tatatacataaatttgtcttttgtaaggcctttattctaactccaaa |
904 |
Q |
| |
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||| |||||| ||||||||||| ||||||| || | ||||||||||||||| |||||| |
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| T |
10329262 |
attcatttgtaaatatatatacataattttgtctattatgaggcctttattctaagtccaaa |
10329323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 3226231 - 3226261
Alignment:
| Q |
125 |
cctttatatattgtgtatgtgtttatctata |
155 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
3226231 |
cctttatatattgtgtatgtgtttatctata |
3226261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 747 - 863
Target Start/End: Original strand, 52240784 - 52240895
Alignment:
| Q |
747 |
aagtgttgaacccatattgtaagctccataaagtctcacgtctaccatctttgctttatgacaaattaaagttgcataattcatttgttatgtgatcttt |
846 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||| || | || |||| |
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| T |
52240784 |
aagtgttgaacccatgttgtaagcatcataaagtctcgcgtctaccatctttgcttcatga-----taaagttgcataatttatttattgtatgtccttt |
52240878 |
T |
|
| Q |
847 |
atttgtttgtatatata |
863 |
Q |
| |
|
|||| ||||||| |||| |
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|
| T |
52240879 |
atttatttgtatgtata |
52240895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 740 - 811
Target Start/End: Complemental strand, 8151980 - 8151909
Alignment:
| Q |
740 |
tatggaaaagtgttgaacccatattgtaagctccataaagtctcacgtctaccatctttgctttatgacaaa |
811 |
Q |
| |
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|||||| ||||||||||| ||| |||||||| |||||||| || |||||||| ||||||||| |||||||| |
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| T |
8151980 |
tatggagaagtgttgaactcatgttgtaagcatcataaagtttcgcgtctaccgtctttgcttcatgacaaa |
8151909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 844 - 904
Target Start/End: Original strand, 8362328 - 8362388
Alignment:
| Q |
844 |
tttatttgtttgtatatatacataaatttgtcttttgtaaggcctttattctaactccaaa |
904 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| || |||||||||||| |||||| |
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|
| T |
8362328 |
tttattcgtttgtatatatacataaatttgtctattgtgagacctttattctaagtccaaa |
8362388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 781 - 863
Target Start/End: Complemental strand, 55741664 - 55741587
Alignment:
| Q |
781 |
ctcacgtctaccatctttgctttatgacaaattaaagttgcataattcatttgttatgtgatctttatttgtttgtatatata |
863 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||| |||||||||||||| || | ||||| || ||||||||||||| |
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|
| T |
55741664 |
ctcacgtctaccatctttgcttcataac-----aaagttgtataattcatttgttgtgaggtctttgttagtttgtatatata |
55741587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 747 - 856
Target Start/End: Complemental strand, 22382461 - 22382357
Alignment:
| Q |
747 |
aagtgttgaacccatattgtaagctccataaagtctcacgtctaccatctttgctttatgacaaattaaagttgcataattcatttgttatgtgatcttt |
846 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| || ||||||||||||||| || ||||| ||||||| |||||||||||||| |||| |||| |
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| T |
22382461 |
aagtgttgaactcatattgtaagcatcataaagcatcgcgtctaccatctttgtttcatgac-----aaagttgtataattcatttgttttgtggccttt |
22382367 |
T |
|
| Q |
847 |
atttgtttgt |
856 |
Q |
| |
|
|||| ||||| |
|
|
| T |
22382366 |
atttatttgt |
22382357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 102764 - 102723
Alignment:
| Q |
863 |
acataaatttgtcttttgtaaggcctttattctaactccaaa |
904 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| |||||| |
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|
| T |
102764 |
acataaatttgtctattgtgaggcctttattctaagtccaaa |
102723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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