View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9156_low_15 (Length: 263)

Name: NF9156_low_15
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9156_low_15
NF9156_low_15
[»] chr4 (3 HSPs)
chr4 (1-247)||(43978403-43978649)
chr4 (203-247)||(7422170-7422214)
chr4 (202-247)||(5032789-5032834)
[»] chr5 (2 HSPs)
chr5 (203-247)||(28735820-28735864)
chr5 (203-247)||(13398353-13398397)
[»] chr6 (5 HSPs)
chr6 (200-237)||(10338614-10338651)
chr6 (203-245)||(8923417-8923459)
chr6 (201-247)||(32931498-32931544)
chr6 (206-247)||(7260407-7260448)
chr6 (202-239)||(29236265-29236302)
[»] chr8 (2 HSPs)
chr8 (203-247)||(28478055-28478099)
chr8 (201-247)||(10440379-10440425)
[»] chr3 (4 HSPs)
chr3 (201-237)||(31652454-31652490)
chr3 (202-247)||(31702694-31702738)
chr3 (202-238)||(17105269-17105305)
chr3 (195-238)||(42065132-42065176)
[»] chr1 (2 HSPs)
chr1 (204-247)||(2743699-2743742)
chr1 (203-247)||(4745518-4745562)
[»] chr2 (1 HSPs)
chr2 (203-237)||(22556246-22556280)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 43978649 - 43978403
Alignment:
Q  1 tgtttacatcgtctttcttcagcttcttctttgaattttgcagccatggttgacacttatttaataagaaccattattggaataatcggttagtgcagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43978649 tgtttacatcgtctttcttcagcttcttctttgaattttgcagccatggtagacacttatttaataagaaccattattggaataatcggttagtgcagaa 43978550  T
Q  101 aaacctctggcttatttcccctgtttattccttctttcttgttctatcaagttgttaaacttatacaaccctaagaagtatcggcaccaaccgcagacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43978549 aaacctctggcttatttcccctgtttattccttctttcttgttctatcaagttgttaaacttatacaaccctaagaagtatcggcaccaaccgcagacat 43978450  T
Q  201 gataataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43978449 gataataatttaagaaaacagaagtgatagaatgtaactatatgtgt 43978403  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 7422170 - 7422214
Alignment:
Q  203 taataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||    
T  7422170 taataatttgagaaaatagaagtgattgaatgtaattatatgtgt 7422214  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 5032789 - 5032834
Alignment:
Q  202 ataataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    |||||||||| |||||||  || |||||||||||||||||||||||    
T  5032789 ataataatttcagaaaatgaaaatgatagaatgtaactatatgtgt 5032834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 28735864 - 28735820
Alignment:
Q  203 taataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  28735864 taataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 13398353 - 13398397
Alignment:
Q  203 taataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    ||||||||||||||||||||||||||  |||||| | ||||||||    
T  13398353 taataatttaagaaaatagaagtgattaaatgtagccatatgtgt 13398397  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 10338614 - 10338651
Alignment:
Q  200 tgataataatttaagaaaatagaagtgatagaatgtaa 237  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10338614 tgataataatttaagaaaatagaagtgattgaatgtaa 10338651  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 8923459 - 8923417
Alignment:
Q  203 taataatttaagaaaatagaagtgatagaatgtaactatatgt 245  Q
    ||||||||||||||||||||| | || ||||||||||||||||    
T  8923459 taataatttaagaaaatagaaataattgaatgtaactatatgt 8923417  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 32931544 - 32931498
Alignment:
Q  201 gataataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    ||||||||||||||||||||||||||||  ||| |||||| ||||||    
T  32931544 gataataatttaagaaaatagaagtgattaaatataactacatgtgt 32931498  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 7260448 - 7260407
Alignment:
Q  206 taatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||    
T  7260448 taatttaagaaaaaagaagtgatcgaatgtaactaaatgtgt 7260407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 29236265 - 29236302
Alignment:
Q  202 ataataatttaagaaaatagaagtgatagaatgtaact 239  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  29236265 ataataatttgagaaaatagaagtgattgaatgtaact 29236302  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 28478099 - 28478055
Alignment:
Q  203 taataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||    
T  28478099 taataatttaaaaaaatagaagtgattgaatgtaactgtatgtgt 28478055  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 10440379 - 10440425
Alignment:
Q  201 gataataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    |||||||||||||||||||| ||||||| |||||| |||| ||||||    
T  10440379 gataataatttaagaaaataaaagtgattgaatgttactacatgtgt 10440425  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 31652454 - 31652490
Alignment:
Q  201 gataataatttaagaaaatagaagtgatagaatgtaa 237  Q
    |||||||||||||||||||||||||||| ||||||||    
T  31652454 gataataatttaagaaaatagaagtgattgaatgtaa 31652490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 31702694 - 31702738
Alignment:
Q  202 ataataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    |||||||||||||||||||| |||||| |||||||| |||||||||    
T  31702694 ataataatttaagaaaatagtagtgattgaatgtaa-tatatgtgt 31702738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 17105269 - 17105305
Alignment:
Q  202 ataataatttaagaaaatagaagtgatagaatgtaac 238  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  17105269 ataataatttaagaaaataaaagtgattgaatgtaac 17105305  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 42065176 - 42065132
Alignment:
Q  195 agacatga-taataatttaagaaaatagaagtgatagaatgtaac 238  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||    
T  42065176 agacatgagtaataaattaagaaaatagaagtgattgaatgtaac 42065132  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 2743699 - 2743742
Alignment:
Q  204 aataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||    
T  2743699 aataatttacgaaaatagaagtgattgaatgtgactatatgtgt 2743742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 4745562 - 4745518
Alignment:
Q  203 taataatttaagaaaatagaagtgatagaatgtaactatatgtgt 247  Q
    |||||| |||||||||||||||| || |||| |||||||||||||    
T  4745562 taataacttaagaaaatagaagtaatcgaatataactatatgtgt 4745518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 22556246 - 22556280
Alignment:
Q  203 taataatttaagaaaatagaagtgatagaatgtaa 237  Q
    |||||||||||||||||||||||||| ||||||||    
T  22556246 taataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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