View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9156_low_2 (Length: 738)
Name: NF9156_low_2
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9156_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 327 - 721
Target Start/End: Complemental strand, 12795295 - 12794904
Alignment:
| Q |
327 |
actagtgttatcctcatccccaaatttccttttagactcttcaacttgaacttccttgcacctaaaac-taggtgcttcgtaactcacattttctacagg |
425 |
Q |
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| T |
12795295 |
actaatgttatcctcatccccaggtttccttttggagtcttcaacttgaacttccttgcaactaaaacctaggtgcttcataactcacattttctacggg |
12795196 |
T |
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| Q |
426 |
gcaccc-atttttcttagattttggaactttcttaagttgaactattggacattagggaatttgttgtatgtttactctcttgtccatttgaatttttac |
524 |
Q |
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| T |
12795195 |
gcaccccatttttcttagattttggaactttcttaagttgaactattggacattagggaatttgttgtatgtttactctcttgtccatttgaagttttaa |
12795096 |
T |
|
| Q |
525 |
atatcattaattgctcatggagttctaacaatgttcgatgtctcttttcattattatgttcttaaaaattcttgtgaggaaacttaacatcacaaattcc |
624 |
Q |
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| T |
12795095 |
atttcattaattgctcatggagttctaataatgttcgatgtctcttttcattattatgttcttaaaaattcgtgtgagtaaacttaacatcacaaattcc |
12794996 |
T |
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| Q |
625 |
actggtacaatatttggtcgtgtacattgagcttgggctacagaaggaatagctggttccgacgtttaatatggtgagcacgtgctatcaacatagt |
721 |
Q |
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| T |
12794995 |
attggtacagtatttggttgtggacattgagcttgg-----agaaggaatagctggttccgacgtataatatggtaagcacttgctatcaacatagt |
12794904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 205 - 339
Target Start/End: Complemental strand, 15439647 - 15439516
Alignment:
| Q |
205 |
tcctttgcatcagtgttatcctccttgagtttccttttagacctttcagctggaactttcatgtacttcaaactaggagctttataactcacattttcta |
304 |
Q |
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| T |
15439647 |
tcctttgcaccagtgttatcca---taagtttccgtttagacctttcagctggaacattcttgtgctttaaaataggagcttcatttttcacattttctc |
15439551 |
T |
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| Q |
305 |
ccttgaaacaatgatcctttgcactagtgttatcc |
339 |
Q |
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| T |
15439550 |
cctttaaaccacaatcctttggaccagtgttatcc |
15439516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 15282825 - 15282874
Alignment:
| Q |
400 |
gcttcgtaactcacattttctacagggcacccatttttcttagattttgg |
449 |
Q |
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| T |
15282825 |
gcttcataactcacattttctaaagagcaccaatttttcttagattttgg |
15282874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 11781843 - 11781899
Alignment:
| Q |
114 |
cattgacctcaagttttgatgatttcatgaaccttcttctcccattattcatcttca |
170 |
Q |
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| T |
11781843 |
cattgacctcgggttttgatgatttcgcgagccttcttatcccattattcatcttca |
11781899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 11781950 - 11782041
Alignment:
| Q |
208 |
tttgcatcagtgttatcctccttgagtttccttttagacctttcagctggaactttcatgtacttcaaactaggagctttataactcacattttc |
302 |
Q |
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| T |
11781950 |
tttgcatcagtgttatc-tc--tgactttccttttagaaccttcagctggaacttccttgtacctgaatctaggagcttcatgactcatattttc |
11782041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 52417996 - 52417940
Alignment:
| Q |
413 |
cattttctacagggcacccatttttcttagattttggaactttcttaagttgaacta |
469 |
Q |
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| T |
52417996 |
cattttctacagggtttccatttttcttagatttcggaacttttttaggttgaacta |
52417940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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