View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9156_low_3 (Length: 718)

Name: NF9156_low_3
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9156_low_3
NF9156_low_3
[»] chr5 (1 HSPs)
chr5 (14-700)||(6971312-6971994)


Alignment Details
Target: chr5 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 14 - 700
Target Start/End: Original strand, 6971312 - 6971994
Alignment:
Q  14 cacagacacgggatgaatagcttcaataggcttgacttggacatgtggtgactcggctgagaaacgtggttccaaacataggcgttatcttccatgtttg 113  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6971312 cacagacacgggatgaatagcttcgataggtttgacttggacatgtggtgactcggctgagaaacgtggttccaaacataggcgttatcttccatgtttg 6971411  T
Q  114 atggaaatcatgcaggtgtgcattataaaagcagtcaattagagtcattcgtttattttcatgaaattacttaatagcaacatcaagtatttcccaatag 213  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6971412 atggaaatcatgcaggtgtgcat-ataaaagcagtcaattagagtcattcgtttattttcatgaaattacttaatagcaacatcaagtatttcccaatag 6971510  T
Q  214 aaaaccttaacttcttcatgtaaataaaccaaatttgtactcctctgggttattannnnnnngattcatttgctgtcattatcgaaattttaatcaacat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  6971511 aaaaccttaacttcttcatgtaaataaaccaaatttgtactcctctgggttattattattttgattcatttgctgtcattatcgaaattttaatcaacat 6971610  T
Q  314 cataaaagatatcctaaaagtgtaatttatagtaactattcaatgagtatttttctttgtttaagtgcttaggtaggagtttaaagttcttctcttcaag 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6971611 cataaaagatatcctaaaagtgtaatttatagtaactattcaatgagtatttttctttgtttaagtgcttaggtaggagtttaaagttcttctcttcaag 6971710  T
Q  414 aatgtatttttaagaaaaacaaattaaagtcctccccaaaagttaagcattacttaattaacttggccacattcattggactgtacaataatattatata 513  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6971711 aatgtctttttaagaaaaacaaattaaagtcctccccaaaagttaagcattacttaattaacttggccacattcattggactgtacaataatattatata 6971810  T
Q  514 gtttcatatagttaacttaactagaatatagtttcttattaagaagctaaaagccctggccctgtttccaagtttcaaacttttacactatccatgcatt 613  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  6971811 gtttcatatagttaacttaacttgaatatagtttcttattaagaagctaaaagccct-gccctgtttccaagtttcaaacttttacac--tccatgcatt 6971907  T
Q  614 gttgtgtatgccatttttgtataatgtactcaacaaaccaatgattatttcaatcagcatgtgcctttctttaagcttccagcattc 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6971908 gttgtgtatgccatttttgtataatgtactcaacaaaccaatgattatttcaatcagcatgtgcctttatttaagcttccagcattc 6971994  T

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