View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9156_low_5 (Length: 641)
Name: NF9156_low_5
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9156_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 39178585 - 39179207
Alignment:
| Q |
1 |
atggtaaaaaggtatatgcggcaactcctagataactacaattacaacttacaatgttgcattttcagttgctgcgtgcagccacaatcacatctgtgat |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
39178585 |
atggtaaaaaggtatatgcgacaactcctagataactacaattacaacttacaatgttgcattttcagtagctacgtgcagccacaatcacatctgtgat |
39178684 |
T |
|
| Q |
101 |
tgcaacttctatttgaaactatgggtctagcttattcagcatatagaattaggctgttcaaaaattcttaatacaagtcaagtgatacaccccgtcaatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39178685 |
tgcaacttctatttgaaactatgggtctagcttattcagcatatagaattaggctgtttaaaaattcttaatacaagtcaagtgatacaccccgtcaatt |
39178784 |
T |
|
| Q |
201 |
tcattaccatgaactattgccttactcgaggaaggaaattttagaaatccaaatgtgagtgaatgagtgatgaagcaccatggttaggatcgagatagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39178785 |
tcattaccatgaactattgccttactcgaggaaggaaattttagaaatccaaatgtgagtgaatgagtgatgaagcgccatggttaggatcgagatagga |
39178884 |
T |
|
| Q |
301 |
taagttcattgtcaagttttggggtcaagttatggtgtcaaatttgctcttgtaatatgttactttccctattaatgtagaccgtgcttttagactcctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39178885 |
taagttcattgtcaagttttggggtcaagttatggtgtcaaatttgctcttgtaatatgttactttccctattaatgtagaccgtgcttttagactcctg |
39178984 |
T |
|
| Q |
401 |
atcccaaacaattataatgttcgtccacgtttctttaccactaagtagcatatattcaaatgatgacaataaatttaacatttcataccatgaaataaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39178985 |
atcccaaacaattataatgttcgtccacgtttctttaccactaagtagcatatattcaaatgatgacaataaatttaacatttcataccatgaaataaat |
39179084 |
T |
|
| Q |
501 |
gcatgatgcaatcacaaaggtcaaatatcttccaagataggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgctt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179085 |
gcatgatgcaatcacaaaggtcaaatatcttccaagataggcatcagctatgtaggctcctgcaagtggcatcatccacactgcaccccccaagttgctt |
39179184 |
T |
|
| Q |
601 |
atgttgtttgatgactccacagt |
623 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39179185 |
atgttgtttgatgactccacagt |
39179207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 284 - 528
Target Start/End: Original strand, 39184941 - 39185207
Alignment:
| Q |
284 |
ttaggatcgagataggataagttcattgtcaagttttggggtcaagttatggtgtcaaatttgctcttgtaatatgttactttccctattaatgtagacc |
383 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| | |
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|
| T |
39184941 |
ttaggatcgagataggataagttcattatcaagttttggggtcaagttatggtaccaaatttactcttgtaatatgttacttgccctattaatgtagatc |
39185040 |
T |
|
| Q |
384 |
gtgcttttagactcctgatcccaaacaattataatgttcgtcc-------------------acgtttctttaccactaagtagcatatattcaa---at |
461 |
Q |
| |
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| |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |
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| T |
39185041 |
gcgcttttggactcctgatcccaaacaattataatgttcatccaatattgttaccaagtcctacgtttctttaccactaagtagcatatattcaaatgat |
39185140 |
T |
|
| Q |
462 |
gatgacaataaatttaacatttcataccatgaaataaatgcatgatgcaatcacaaaggtcaaatat |
528 |
Q |
| |
|
||||| || ||||| |||||||| |||| ||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
39185141 |
gatgaaaacgaatttcacatttcagaccaagaagtaaatgcatgatgcaatcacaaaggtccaatat |
39185207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 440 - 623
Target Start/End: Original strand, 39196105 - 39196286
Alignment:
| Q |
440 |
actaagtagcatatattcaaatgatgacaataaatttaacatttcataccatgaaataaatgcatgatgcaatcacaaaggtcaaatatcttccaagata |
539 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| | |||| ||||||| || |||||||||||||||||| || |||||| |||| | |||| ||| |
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|
| T |
39196105 |
actaagtagcatatactcaaatgatgaaaataaatat--cattacataccaagagataaatgcatgatgcaattacgaaggtccaatagcggccaaaata |
39196202 |
T |
|
| Q |
540 |
ggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttgatgactccacagt |
623 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||| | |||| || ||||||| | |||||||| || |||||||| |
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|
| T |
39196203 |
agcatcggctatgtaagctcctacaagtggcatcatccacaccgaacccgcccagttgctaacgttgtttgcagattccacagt |
39196286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 436 - 581
Target Start/End: Original strand, 39217711 - 39217854
Alignment:
| Q |
436 |
taccactaagtagcatatattcaaatgatgacaataaatttaacatttcataccatgaaataaatgcatgatgcaatcacaaaggtcaaatatcttccaa |
535 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| | |||| ||||||| || |||||||||||||||||| ||||||||| |||| | || | |
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|
| T |
39217711 |
tacctctaagtagcatatattcaaatgatgaaaataaatat--cattacataccaagagataaatgcatgatgcaattacaaaggtccaatagcgaccga |
39217808 |
T |
|
| Q |
536 |
gataggcatcagctatgtaagctcctgcaagtggcatcatccacac |
581 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
39217809 |
aataagcatcggctatgtaagctcctacaagtggcatcatccacac |
39217854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 39181778 - 39181909
Alignment:
| Q |
15 |
tatgcggcaactcctagataactacaattacaac---ttacaatg-ttgcattttcagttgctgcgtgcagccacaatcacatctgtgattgcaacttct |
110 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||| |||||||| |||||||| |||||||| | |||||||||||||||||||||||||||| || |
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|
| T |
39181778 |
tatgcgacaactc-tagataactacagttacaacaacttacaatggttgcatttgcagttgcttc----agccacaatcacatctgtgattgcaactcct |
39181872 |
T |
|
| Q |
111 |
atttgaaactatgggtctagcttattcagcatataga |
147 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39181873 |
atttgaaactatgcgtctagcttattcagcatataga |
39181909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 440 - 611
Target Start/End: Original strand, 39224813 - 39224982
Alignment:
| Q |
440 |
actaagtagcatatattcaaatgatgacaataaatttaacatttcataccatgaaataaatgcatgatgcaatcacaaaggtcaaatatcttccaagata |
539 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| | |||| ||||||| || ||||||||||||||||| ||||||||| |||| | |||| ||| |
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|
| T |
39224813 |
actaagtagcatatactcaaatgatgaaaataaatat--cattacataccaagagataaatgcatgatgcaactacaaaggtccaatagcggccaaaata |
39224910 |
T |
|
| Q |
540 |
ggcatcagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgtttga |
611 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||| | ||| || ||||||| | ||||||||| |
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|
| T |
39224911 |
agcatcggcaatgtaagctcctacaagtggcatcatccacaccgaacctgcccagttgctaacgttgtttga |
39224982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 478 - 623
Target Start/End: Original strand, 39240349 - 39240494
Alignment:
| Q |
478 |
acatttcataccatgaaataaatgcatgatgcaatcacaaaggtcaaatatcttccaagataggcatcagctatgtaagctcctgcaagtggcatcatcc |
577 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||| || |
|
|
| T |
39240349 |
acatatcataccatgaggtaaatgcatgatgcaattacaaaggtccaatatcggccaagataagcatcagctacataagctcctgcaagtggcatcaacc |
39240448 |
T |
|
| Q |
578 |
acactgcaccccccaagttgcttatgttgtttgatgactccacagt |
623 |
Q |
| |
|
| |||| || ||| | ||||| || |||||||| || |||||||| |
|
|
| T |
39240449 |
aaactgatcctccccaattgctaatattgtttgaagattccacagt |
39240494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 482 - 623
Target Start/End: Original strand, 39257929 - 39258070
Alignment:
| Q |
482 |
ttcataccatgaaataaatgcatgatgcaatcacaaaggtcaaatatcttccaagataggcatcagctatgtaagctcctgcaagtggcatcatccacac |
581 |
Q |
| |
|
||||||||| || ||||||||| ||||||| ||||||||| | |||| |||||||| |||||||||| |||||||||| |||||||||||||||| || |
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|
| T |
39257929 |
ttcataccaagagataaatgcacgatgcaactacaaaggtccagtatcgaccaagatatgcatcagctacgtaagctcctacaagtggcatcatccaaac |
39258028 |
T |
|
| Q |
582 |
tgcaccccccaagttgcttatgttgtttgatgactccacagt |
623 |
Q |
| |
|
|| |||| || | ||||| | ||||||||| || |||||||| |
|
|
| T |
39258029 |
tgaacccgcccaattgctaacgttgtttgaagattccacagt |
39258070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 39191713 - 39191776
Alignment:
| Q |
545 |
cagctatgtaagctcctgcaagtggcatcatccacactgcaccccccaagttgcttatgttgttt |
609 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||| |
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|
| T |
39191713 |
cagctatgtaagctcttgcaagtggcatcatcgacactg-aacccccaagttgcttatgttgttt |
39191776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 592 - 623
Target Start/End: Original strand, 39191797 - 39191828
Alignment:
| Q |
592 |
aagttgcttatgttgtttgatgactccacagt |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39191797 |
aagttgcttatgttgtttgatgactccacagt |
39191828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 560
Target Start/End: Original strand, 39261759 - 39261823
Alignment:
| Q |
496 |
taaatgcatgatgcaatcacaaaggtcaaatatcttccaagataggcatcagctatgtaagctcc |
560 |
Q |
| |
|
||||||| ||||| || ||||||||| |||||| || ||||| |||||||||||||||||||| |
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|
| T |
39261759 |
taaatgcctgatgatataacaaaggtccaatatcgaccgagataagcatcagctatgtaagctcc |
39261823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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