View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9156_low_7 (Length: 563)

Name: NF9156_low_7
Description: NF9156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9156_low_7
NF9156_low_7
[»] chr5 (3 HSPs)
chr5 (1-530)||(9283425-9283953)
chr5 (425-498)||(23557714-23557787)
chr5 (425-503)||(17831904-17831983)
[»] chr7 (2 HSPs)
chr7 (211-323)||(35051298-35051407)
chr7 (425-500)||(35049798-35049873)
[»] chr4 (1 HSPs)
chr4 (425-498)||(54077446-54077519)
[»] chr3 (2 HSPs)
chr3 (211-323)||(53324215-53324324)
chr3 (403-498)||(26301855-26301951)
[»] chr1 (3 HSPs)
chr1 (425-498)||(41699431-41699504)
chr1 (425-498)||(41705025-41705098)
chr1 (403-498)||(49245200-49245296)
[»] chr8 (1 HSPs)
chr8 (425-497)||(13388174-13388247)


Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 9283425 - 9283953
Alignment:
Q  1 aacaacatttcgacacgatcaaagagacaaaacacaccaaaatgtacagagaacaaaagtaattcataatgactgtttcaacaacaataaaataaagcta 100  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9283425 aacaacatttcgacacgatcaaagagacaaaact-accaaaatgtacagagaacaaaagtaattcataatgactgtttcaacaacaataaaataaagcta 9283523  T
Q  101 aataaatagttgctgcaacaatatatgacagaaagtctagattctaattatcatccttactgctaatattgtaaatgtaagctgttgtgtcataaccact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9283524 aataaatagttgctgcaacaatatatgacagaaagtctagattctaattatcatccttactgctaatattgtaaatgtaagctgttgtgtcataaccact 9283623  T
Q  201 taacgcaaaataaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9283624 taacgcaaaataaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagtggttcattcatgtctctcatatgatgatggttt 9283723  T
Q  301 atcattcatatgatgttgtgcctnnnnnnntgagtggttcattcaattcatgtctctcattagatagccctttcaactcttatcttccaaagtagtttat 400  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9283724 atcattcatatgatgttgtgcctaaaaaaatgagtggttcattcaattcatgtctctcattaaatagccctttcaactcttatcttccaaagtagtttat 9283823  T
Q  401 tcatgtcgcttaacaaatatcctctcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctcga 500  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9283824 tcatgtcgcttaacaattatcctctcaaccattcattatcaagcaattcataacagtcaatcagttttgtccactgctccatgaaatcagttatgctcga 9283923  T
Q  501 cgatacgaatcacatacaccatcgtgtaaa 530  Q
    ||||||||||||||||||||||||||||||    
T  9283924 cgatacgaatcacatacaccatcgtgtaaa 9283953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 23557787 - 23557714
Alignment:
Q  425 tcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctc 498  Q
    ||||||||||||||||| | | ||||||||| ||||||| ||||  ||||||||||||||||||| ||||||||    
T  23557787 tcaaccattcattatcatgaagttcataacattcaatcattttttcccacttctccatgaaatcacttatgctc 23557714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 17831904 - 17831983
Alignment:
Q  425 tcaaccattcattatcaagcaattcataacagtcaatcagttttgtc-cacttctccatgaaatcagttatgctcgacga 503  Q
    ||||||||||||||||| ||| ||||||| | ||||||  |||| |  ||||||||||||||||||  ||||||||||||    
T  17831904 tcaaccattcattatcatgcagttcataaaattcaatcttttttttttcacttctccatgaaatcaaatatgctcgacga 17831983  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 35051407 - 35051298
Alignment:
Q  211 taaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcata 310  Q
    |||||||||  |||||||||||||| ||||| |||||||||||| |||||||| || |||||||||||||| |||  ||  ||||||||||||| |||||    
T  35051407 taaatagtttctgcaagtctgcaacaatcatcttcaactctcatctcccaaagaagtggttcattcatgtc-ctc--attctgatggtttatcaatcata 35051311  T
Q  311 tgatgttgtgcct 323  Q
    || ||||||||||    
T  35051310 tggtgttgtgcct 35051298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 500
Target Start/End: Complemental strand, 35049873 - 35049798
Alignment:
Q  425 tcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctcga 500  Q
    ||||||||||||||||| ||| ||| ||||| ||||||| |||| ||||||||||||||||||||| |||||||||    
T  35049873 tcaaccattcattatcatgcagttcgtaacattcaatcatttttttccacttctccatgaaatcagatatgctcga 35049798  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 54077446 - 54077519
Alignment:
Q  425 tcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctc 498  Q
    ||||||||||||||||| | | ||||||||| ||||||| ||||  ||||||||||||||||||| ||||||||    
T  54077446 tcaaccattcattatcatgaagttcataacattcaatcattttttcccacttctccatgaaatcacttatgctc 54077519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 53324215 - 53324324
Alignment:
Q  211 taaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcata 310  Q
    |||||||||  || ||||||||||| ||||| |||||||||| | | |||||| || |||||||||||||| |||  || |||||||||||||| |||||    
T  53324215 taaatagtttctgaaagtctgcaacaatcatcttcaactctcgtcttccaaagaagtggttcattcatgtc-ctc--attatgatggtttatcaatcata 53324311  T
Q  311 tgatgttgtgcct 323  Q
    || ||||||||||    
T  53324312 tggtgttgtgcct 53324324  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 498
Target Start/End: Complemental strand, 26301951 - 26301855
Alignment:
Q  403 atgtcgcttaacaaatat-cctctcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctc 498  Q
    |||||||||| ||||||| ||| |||||||||||||||||   | ||||||||| ||||||| ||||  | || |||| ||||||||| || |||||    
T  26301951 atgtcgcttatcaaatatacctttcaaccattcattatcatatagttcataacattcaatcattttttcctacctctctatgaaatcacttttgctc 26301855  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 41699504 - 41699431
Alignment:
Q  425 tcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctc 498  Q
    ||||||||||||||||| | | ||||||||| ||||||| ||||  ||||||||||||||||||| ||||||||    
T  41699504 tcaaccattcattatcatgaagttcataacattcaatcattttttcccacttctccatgaaatcacttatgctc 41699431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 41705098 - 41705025
Alignment:
Q  425 tcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctc 498  Q
    ||||||||||||||||| | | ||||||||| ||||||| ||||  ||||||||||||||||||| ||||||||    
T  41705098 tcaaccattcattatcatgaagttcataacattcaatcattttttcccacttctccatgaaatcacttatgctc 41705025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 498
Target Start/End: Complemental strand, 49245296 - 49245200
Alignment:
Q  403 atgtcgcttaacaaatatcc-tctcaaccattcattatcaagcaattcataacagtcaatcagttttgtccacttctccatgaaatcagttatgctc 498  Q
    |||||||| | ||||||||| | ||||||||||||||||| | |  |||||||| ||||||| ||||  |||| |||| ||||||||| || |||||    
T  49245296 atgtcgctcatcaaatatccctttcaaccattcattatcatgtatctcataacattcaatcattttttcccacatctctatgaaatcacttttgctc 49245200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 497
Target Start/End: Complemental strand, 13388247 - 13388174
Alignment:
Q  425 tcaaccattcattatcaagcaattcataacagtcaatca-gttttgtccacttctccatgaaatcagttatgct 497  Q
    ||||||||||||||||| ||| ||||||||| |||||||  |||| |||| |||||||||||||||| ||||||    
T  13388247 tcaaccattcattatcatgcagttcataacattcaatcattttttttccaattctccatgaaatcagatatgct 13388174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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