View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9157_low_2 (Length: 342)

Name: NF9157_low_2
Description: NF9157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9157_low_2
NF9157_low_2
[»] chr2 (3 HSPs)
chr2 (50-327)||(26662153-26662436)
chr2 (192-260)||(26666243-26666311)
chr2 (192-261)||(26662004-26662073)
[»] chr1 (2 HSPs)
chr1 (50-327)||(22902409-22902695)
chr1 (192-327)||(46886001-46886135)
[»] chr6 (2 HSPs)
chr6 (92-253)||(19702429-19702600)
chr6 (51-96)||(19701711-19701756)
[»] scaffold0586 (2 HSPs)
scaffold0586 (50-171)||(10138-10265)
scaffold0586 (257-327)||(2985-3055)
[»] chr8 (4 HSPs)
chr8 (257-327)||(10638565-10638635)
chr8 (257-327)||(32716976-32717046)
chr8 (50-130)||(10638184-10638264)
chr8 (50-130)||(32717347-32717427)
[»] chr7 (1 HSPs)
chr7 (103-170)||(38935512-38935585)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 50 - 327
Target Start/End: Original strand, 26662153 - 26662436
Alignment:
Q  50 gatacaacaactgagctcctagttgtattgttaaagcttagcaacttgatagtcaaaatatgcaagatgtggtacataatc------aagtagtatgatg 143  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||      |||||||||||||    
T  26662153 gatacatcaactgagctcctagttgtattgttaaagcttagtaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatg 26662252  T
Q  144 ttcaatgttacatctctgtgcacaatttagcattcttttgtttccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatt 243  Q
    ||||||||||||||| |||||| |||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26662253 ttcaatgttacatctttgtgcataatttgacattcttttgtttccatcatgatatttccaagtgtgaaatattatctaagaaagtgagatttgtcaaatt 26662352  T
Q  244 tagaatcactatatatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 327  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662353 tggaatcactatatatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 26662436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 26666243 - 26666311
Alignment:
Q  192 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatatt 260  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26666243 atgatgttcccaagtgtgacatattatctaagaaagtgagatttgtcaaatttggaatcactatatatt 26666311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 26662004 - 26662073
Alignment:
Q  192 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatattt 261  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26662004 atgatgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaatcattatatattt 26662073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 50 - 327
Target Start/End: Original strand, 22902409 - 22902695
Alignment:
Q  50 gatacaacaactgagctcctagttgtattgttaaagcttagcaacttgatagtcaaaatatgcaagatgtggtacataatc------aagtagtatgatg 143  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||      |||||||||||||    
T  22902409 gatacaacaactgagctcctagttgtattgttaaaacttagcaatttgatagtgaaaatctgtaagatgtggtacataatctaagtcaagtagtatgatg 22902508  T
Q  144 ttcaatgttacatctctgtgcacaatttagcattcttttgttt---ccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaa 240  Q
    |||||||||| |||||||||||||||||  |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22902509 ttcaatgttatatctctgtgcacaatttgacattcttttgttttttccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaa 22902608  T
Q  241 atttagaatcactatatatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 327  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22902609 atttggaatcactatgtatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 22902695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 46886135 - 46886001
Alignment:
Q  192 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatatttggatgtttgtgctctgtttagaatgttata 291  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  46886135 atgatattcccaagtgtaaaattttatctaagaaagtgagatttgtcaaatttagaatcactatatatt-ggatgtttgtcctctgtttagaatgttata 46886037  T
Q  292 tatggtgtaattcctatgtctctaatatagtattat 327  Q
    ||||||||||||||||||||||||||||||||||||    
T  46886036 tatggtgtaattcctatgtctctaatatagtattat 46886001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 92 - 253
Target Start/End: Original strand, 19702429 - 19702600
Alignment:
Q  92 aacttgatagtcaaaatatgcaagatgtggtacataatc------aagtagtatgatgttcaatgttacatctctgtgcacaatttagca-ttcttttgt 184  Q
    ||||||||||| ||||| |||||||||||||||||||||      ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  19702429 aacttgatagtgaaaatctgcaagatgtggtacataatctaagacaagtagtatgatgttcaatgttatatctctgtgcacaatttggcaattcttttgt 19702528  T
Q  185 tt---ccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcact 253  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  19702529 tttttccatcatgatattcccaagtgtgaaatattatctaagaaagtgaaatttgtcaaatttaaaatcact 19702600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 19701711 - 19701756
Alignment:
Q  51 atacaacaactgagctcctagttgtattgttaaagcttagcaactt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19701711 atacaacaactgagctcctagttgtattgttaaagcttagcaactt 19701756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 10138 - 10265
Alignment:
Q  50 gatacaacaactgagctcctagttgtattgttaaagcttagcaacttgatagtcaaaatatgcaagatgtggtacataa------tcaagtagtatgatg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||      |||||||||||||||    
T  10138 gatacaacaactgagctcctagttgtattgttaaagcttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatg 10237  T
Q  144 ttcaatgttacatctctgtgcacaattt 171  Q
    |||||||||| |||||||||||||||||    
T  10238 ttcaatgttatatctctgtgcacaattt 10265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 2985 - 3055
Alignment:
Q  257 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2985 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 3055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 10638565 - 10638635
Alignment:
Q  257 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10638565 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 10638635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 32717046 - 32716976
Alignment:
Q  257 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717046 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 32716976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 10638184 - 10638264
Alignment:
Q  50 gatacaacaactgagctcctagttgtattgttaaagcttagcaacttgatagtcaaaatatgcaagatgtggtacataatc 130  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||    
T  10638184 gatacaacaactgagctcctagttgtattgttaaaacttagcaatttgatagtgaaaatctgcaagatgtggtacataatc 10638264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 32717427 - 32717347
Alignment:
Q  50 gatacaacaactgagctcctagttgtattgttaaagcttagcaacttgatagtcaaaatatgcaagatgtggtacataatc 130  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||    
T  32717427 gatacaacaattgagctcctagttgtattgttaaagcttaacaacttgatagtgagaatatgcaagatgtggtacataatc 32717347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 38935512 - 38935585
Alignment:
Q  103 caaaatatgcaagatgtggtacataatc------aagtagtatgatgttcaatgttacatctctgtgcacaatt 170  Q
    |||||| ||||||||| |||||||||||      |||||||||| | |||||||||| ||||||||||||||||    
T  38935512 caaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt 38935585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University