View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9157_low_5 (Length: 255)
Name: NF9157_low_5
Description: NF9157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9157_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 31043712 - 31043946
Alignment:
| Q |
17 |
aaatgtttcttaaacacaccttttgctattaattaaacaatgggagacaaaaaattacatgagatctatctcattttaaacaagtcataagaagaggtgc |
116 |
Q |
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| T |
31043712 |
aaatgtttcttaaacacaccttttgctattaattaaacaa----agacaaaaaattacatgagatctatctcatattaaacaagtcgtaagaagagttgc |
31043807 |
T |
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| Q |
117 |
cgtgtgcaatataagtatcaaaatagatgttataaaattaatgagctatgttgggagttgggttggggtgttgaggacctaaaacaagggtttgtctggt |
216 |
Q |
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| T |
31043808 |
catgtgcaatataagtatcaaaatagatgttataaaattaatgagctatgttgggagttgggttggggtgttgaggacctaaaacaagggtttgtctggt |
31043907 |
T |
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| Q |
217 |
cttagcattgaaatgagccttactaatgctaacaatttc |
255 |
Q |
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| T |
31043908 |
cttagcattgaaatgagccttactaatgctaacaatttc |
31043946 |
T |
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