View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9158_high_3 (Length: 277)
Name: NF9158_high_3
Description: NF9158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9158_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 31302598 - 31302338
Alignment:
| Q |
1 |
cttaacccaagatgaagatgattattatagacgtattgttgccttggatgaggagtacgcagccttaacacgcaagttatatgcaaatagaagtaagcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31302598 |
cttaacccaagatgaagatgattattatagacgtattgttgccttggatgaggagtacgcagccttaacacgcaagttatatgcaaatagaagtaagcat |
31302499 |
T |
|
| Q |
101 |
ttggctgagagagaggctgtggaatacgtttctaataagaagaagaaaattatggacgaaagggcaaggttaaacgtcccatttataatctagagtcgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31302498 |
ttggctgagagagaggctgtggaatacgtttctaataagaagaagaaaattatggacgaaagggcaaggtgaaacgtcccatttataatctagagtcgca |
31302399 |
T |
|
| Q |
201 |
tgtaacgacgtttctaataagaagaaaaaattgtttggtagatggattagatggattttgt |
261 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31302398 |
tgtaacgacatttctaataagaaggaaaaattgtttggtagatgaattagatggattttgt |
31302338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 24906918 - 24907181
Alignment:
| Q |
2 |
ttaacccaagatgaagatgattattatagacgtattgttgccttggatgaggagtacgcagccttaacacgcaagttatatgcaaatagaagtaagcatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24906918 |
ttaacccaagatgaagatgattattatagacgtattgttgccttggatgaggagtacgcagccttaacacgcaagttatatgaaaatagaagtaagcatt |
24907017 |
T |
|
| Q |
102 |
tggctgagagagaggctgtggaatacgtttctaataagaagaagaaaattatggacgaaagggcaaggttaaacgtcccatttataatctagagtcgcat |
201 |
Q |
| |
|
||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24907018 |
tggttgagagagaagctgtggattacatttctaataagaagaagaaaattatggacgaaagggcaaggttaaacgtcccatttataatctagagttgcat |
24907117 |
T |
|
| Q |
202 |
gtaacgacgtttcta--ataagaaga--aaaaattgtttggtagatggattagatggattttgt |
261 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24907118 |
gtaacgacgtttctaatataagaagaagaaaaattgtttggtagatggattagatggattttgt |
24907181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University