View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9158_low_1 (Length: 484)
Name: NF9158_low_1
Description: NF9158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9158_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Complemental strand, 41564779 - 41564327
Alignment:
| Q |
14 |
atccttgtccaactatgtgaagttggtggatgggggtggacggtgatgtttcatttgtagcctaaagtgccatctaaagttgtgtgattgccgcttcaaa |
113 |
Q |
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| T |
41564779 |
atccttgtccaactatgtgaagttggtggatgggggtggacggtgatgtttcatttgtagcctaaagtgccatctaaagttgtgtgattgccgcttcaaa |
41564680 |
T |
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| Q |
114 |
gtaatacaaaatattgttctccattgtgaatacaaattaattttcttattgtaggaaaaagaaacatatacaagttaaggaattcgtacaattgaattta |
213 |
Q |
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| T |
41564679 |
gtaatacaaaatattgttctccattgtgaatacaaattaattttcttattgtaggaaaaagaaacatatacaagttaaggaagtcgtacaattgaattta |
41564580 |
T |
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| Q |
214 |
ctagttgataagtaaatttgacgatgtaaattgtaaactaactgattgcatgcaagaaattcaaattcatgtatttttataaaaccacttttaataggag |
313 |
Q |
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| T |
41564579 |
ctagttgataagtaaatttgacgatgtaaattgtaaactaactgattgcatgcaagaaattcaaattcatgtttttttataaaaccacttttaataggag |
41564480 |
T |
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| Q |
314 |
accaaactcgtgtttggcgaattgaaaaatcaaggtagtgtggtacgttccacaatctaaaagtgtgattttctttccttttcttcaatgtagatgaaac |
413 |
Q |
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| T |
41564479 |
accaaacgtgtgtttggcgaattgaaaaatcatggtagtgtggtacgttccacaatctaaaagtgtgattttctttccttttcttcaatgtagatgaaac |
41564380 |
T |
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| Q |
414 |
atttctaacttttaagtatttgagaaaaacaacctatatagagaggggtgggattt |
469 |
Q |
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| T |
41564379 |
atttctaac-tttaagtatttgagaaaaacaacctatat--agaggggtgggattt |
41564327 |
T |
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