View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9158_low_3 (Length: 390)
Name: NF9158_low_3
Description: NF9158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9158_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 101 - 373
Target Start/End: Complemental strand, 41565242 - 41564962
Alignment:
| Q |
101 |
tcaagagattgtgatacgt----gtatttcatttattgtgcctgtttgtttttcatacaacatagcatttccttattagttttacaagttttgacaagtt |
196 |
Q |
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| T |
41565242 |
tcaagagattgtgatacgtacgtgtatttcatttattgtgcctgtttgtttttcatacaacatagcatttccttattagttttacaagttttgacaagtt |
41565143 |
T |
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| Q |
197 |
a---gttgattgagtgtgaagaaacttgattgcttgactatgaagtaactgatattctt-taacgtgagacttctatcattaacattattctttaacgta |
292 |
Q |
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| T |
41565142 |
attagttgattgagtgtgaagaaacttgattgcttgactatgaagtaactgatactctaataacgtgagacttctatcattaacattattctttaacgta |
41565043 |
T |
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| Q |
293 |
actcaaatctcaacgaatatattgaatccaagctaaaatatgattccattaagtgagagaatttcatgacttaacgttttt |
373 |
Q |
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| T |
41565042 |
actcaaatgtcaacgaatatattgaatccaagctaaaatatgattccattaagtgagagaatttcatgacttaactttttt |
41564962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 41565646 - 41565567
Alignment:
| Q |
4 |
gtcggaaaggatggagaaatggtgccgcgaaggacagaagcgcctcgtcgcagcaccaagagatatgatttgttggaata |
83 |
Q |
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| T |
41565646 |
gtcggaaaggatggagaaatggtgccgcggaggatagaagcgcctcgtcgcagcaccaagagatatgatttgttggaata |
41565567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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