View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9159_low_2 (Length: 982)

Name: NF9159_low_2
Description: NF9159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9159_low_2
NF9159_low_2
[»] chr2 (1 HSPs)
chr2 (9-971)||(44693438-44694402)


Alignment Details
Target: chr2 (Bit Score: 783; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 9 - 971
Target Start/End: Complemental strand, 44694402 - 44693438
Alignment:
Q  9 agaagcagagaggttagattttagaggctgcagtgacatgagaacgaccattagctcctagaaaaagatcaggtgaatgtgtatggctcttatcagtttt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694402 agaagcagagaggttagattttagaggctgcagtgacatgagaacgaccattagctcctagaaaaagatcaggtgaatgtgtatggctcttatcagtttt 44694303  T
Q  109 atgttggcagtcattatcttcatcttcttcagcatcccataggaattttgcatatgaagccaagacatagctgatgtgataataatattaatttactaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694302 atgttggcagtcattatcttcatcttcttcagcatcccataggaattttgcatatgaagccaagacatagctgatgtgataataatattaatttactaat 44694203  T
Q  209 tagtttttatatattacattcaagaaaaatcaggacacaaacaaacccttgttatttgtttgnnnnnnnnnnnnnnnnnnnnnnnngcaaacagtctaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                        |||||  |||||||    
T  44694202 tagtttttatatattacattcaagaaaaatcaggacacaaacaaacccttgttatttgtttgaaaaaaaagcatgaaaaaaaaaaagcaaaacgtctaaa 44694103  T
Q  309 gaatttttcttggacgatcaataattatttttgaaaattagtaattacgtagttgttatagttcaccagagtttgaatctggtgtc-tccaacttcctag 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44694102 gaatttttcttggacgatcaataattatttttgaaaattagtaattacgtagttgttatagttcaccagagtttgaatctggtgtcctccaacttcctag 44694003  T
Q  408 acccttaacacaaatagttgagctacccaccccaaagataatttaatattatcacaagttcgctaatgactagaacttcctttgttcctgatcgttggtc 507  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694002 tcccttaacacaaatagttgagctacccaccccaaagataatttaatattatcacaagttcgctaatgactagaacttcctttgttcctgatcgttggtc 44693903  T
Q  508 tttgaaaatcggacacttagaaaaaatcaatttaaatagataatagactaatttacctctttttaattgcattttttacccttgttgtccttattcacaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44693902 tttgaaaatcggacacttagaaaaaatcaatttaaatagataatagactaatttacctctttttgattgcattttttacccttgttgtccttattcacaa 44693803  T
Q  608 ttttaatcttaaattttcataatgttcattacacttaaatcttaaatcataatattgannnnnnnnnnnnngaaacggctaatattattaagcagagcta 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||    
T  44693802 ttttaatcttaaattttcataatgttcattacacttaaatcttaaatcataatattga-ttttttttttttgaaacggctaatattattaagcagagcta 44693704  T
Q  708 gcacgagaagcactcagtccgcgaaaggaggaaaaagagtacaaaggatgcaaaacaactaaaagcactcaaactgcccaccactcgat--nnnnnnnnc 805  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  44693703 gcacgagaagcactcagcccgcgaaaggaggaaaaagagtacaaaggatgcaaaacaactaaaagcactcaaactgcccaccactcgataaaaaaaaaaa 44693604  T
Q  806 ccctaaaaggcctgccaaacagcgcagggccaaagctcatgacgcagcagcaacaaacacagctgactgctaaacaggagcaccaaaaacaggataaaaa 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693603 ccctaaaaggcctgccaaacagcgcagggccaaagctcatgacgcagcagcaacaaacacagctgactgctaaacaggagcaccaaaaacaggataaaaa 44693504  T
Q  906 ctactaggcctacccacacagctcacaacaaacgcacactaacagcagcacaaacaacctagagaa 971  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693503 ctactaggcctacccacacagctcacaacaaacgcacactaacagcagcacaaacaacctagagaa 44693438  T

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