View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9159_low_3 (Length: 675)

Name: NF9159_low_3
Description: NF9159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9159_low_3
NF9159_low_3
[»] chr7 (1 HSPs)
chr7 (11-657)||(48368387-48369033)


Alignment Details
Target: chr7 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 11 - 657
Target Start/End: Complemental strand, 48369033 - 48368387
Alignment:
Q  11 agattatactattgacacttgctatattttaatctgattaggtatgatacaactttcaaaagcattcaatcagtatgaataaacttgtctaatttggtcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48369033 agattatactattgacacttgctatattttaatctgattaggtatgatacaactttcaaaagcattcaatcagtatgaataaacttgtctaatttggtcc 48368934  T
Q  111 caaagatggtcaaaccaccaagcataaaatacatccacaaagtaagcacgagtcctcatttcccagaagcatttaaaatattttctttttgttaaaaccg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48368933 caaagatggtcaaaccaccaagcataaaatacatccacaaagtaagcacgagtcgtcatttcccagaagcatttaaaatattttctttttgttaaaaccg 48368834  T
Q  211 taattgaaagggaaatccatacattattacagatttagatttcatgcagtcaagatggtccagatttaaagcaggtttattcttattatttagactgcat 310  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48368833 caattgaaagggaaatccatacattattacagatttggatttcatgcagtcaagatggtccagatttaaagcaggtttattcttattatttagactgcat 48368734  T
Q  311 taaatctggaccattcgatcaaatccctcctaactgcgcgacttcaggcccattaagagtgaaagagaaatatatatctaaattttttagatatgaatat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48368733 taaatctggaccattcgatcaaatccctcctaactgcgcgacttcaggcccatcaagaatgaaagagaaatatatatctaaattttttagatatgaatat 48368634  T
Q  411 aacagcaatgttaattgttaacagcatctgcaaataaaaaatctacatatctcacatatattgatgtcaaaatattcgttggcttcatatatccgttact 510  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||    
T  48368633 aacagtaatgttaattgttaacagcatctgcaaataaaaaatctacatatcgcacatatattgatgtcaaaatatttgttgccttcatatatccgtaact 48368534  T
Q  511 actttaaaaactcttaaaaatagaactgaataagtatgccagaagttttatgctatgtgccgcattgcaagcaacatttctcttccttctaaactggaaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48368533 actttaaaaactcttaaaaatagaactgaataagtatgccagaagttttatactatgtgccgcattgcaagcaacatttctcttccttctaaactggaaa 48368434  T
Q  611 taaaactagcaacacactctttagcacacatgtttcaacatactctc 657  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48368433 taaaactagcaacacactctttagcacacatgtttcaacatactctc 48368387  T

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