View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9159_low_5 (Length: 283)
Name: NF9159_low_5
Description: NF9159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9159_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 50384738 - 50384991
Alignment:
| Q |
19 |
taatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccnnnnnnnt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50384738 |
taatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccaaaaaaat |
50384837 |
T |
|
| Q |
119 |
agcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384838 |
agcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaat |
50384937 |
T |
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| Q |
219 |
ttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtctc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384938 |
ttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtctc |
50384991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 50393160 - 50393409
Alignment:
| Q |
22 |
tcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccnnnnnnntagc |
121 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| || || || ||||||||||| ||||||||||||||||| ||| |||| |
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| T |
50393160 |
tcaacgaactctatccaccttgggtagttttaacaataggtgctatactaaacttttttggttactttatgatttggttatcagtcaccaaaaaaatagc |
50393259 |
T |
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| Q |
122 |
aagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttc |
221 |
Q |
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| T |
50393260 |
aagaccaaaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttc |
50393359 |
T |
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| Q |
222 |
cctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtct |
271 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
50393360 |
cctgaatctcgcggagcggttttgggaattcttaaaggttatgttggtct |
50393409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 50389883 - 50390135
Alignment:
| Q |
19 |
taatcaacgaactctatccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccnnnnnnnt |
118 |
Q |
| |
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||||||||||| ||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| | || | |
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| T |
50389883 |
taatcaacgaaatctctccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttcatgatttggttatccataacaaaaaaaat |
50389982 |
T |
|
| Q |
119 |
agcaagaccacaagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaat |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
50389983 |
tgcaagaccacatgtttggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaacaccggttcacttgttacttgtgttaagaat |
50390082 |
T |
|
| Q |
219 |
ttccctgaatctcgcggcgcggttttgggaattcttaaaggctatgttggtct |
271 |
Q |
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||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| |
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| T |
50390083 |
ttccccgaatctcgcggagctgttttgggaattctaaaaggatatcttggtct |
50390135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 130 - 271
Target Start/End: Original strand, 50406881 - 50407022
Alignment:
| Q |
130 |
aagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| | |
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| T |
50406881 |
aagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtctttttcaaacactggttcacttgttacttgtgttaagaatttccccgaaac |
50406980 |
T |
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| Q |
230 |
tcgcggcgcggttttgggaattcttaaaggctatgttggtct |
271 |
Q |
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||| || | || ||||| ||| | ||||| ||||||||||| |
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| T |
50406981 |
tcgtggtgttgtgttggggattttaaaaggttatgttggtct |
50407022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 41333949 - 41334043
Alignment:
| Q |
130 |
aagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccct |
224 |
Q |
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|||||||||||||||||||||| ||||| || ||||| |||||||| ||||| | ||||| ||| | | || ||||||||||||||||||||| |
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| T |
41333949 |
aagtttggcaaatgtgtctttatatttgcattggtgcaaattctcaaacttttactaacacaggtgctttagttacttgtgttaagaatttccct |
41334043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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