View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9160_low_4 (Length: 237)

Name: NF9160_low_4
Description: NF9160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9160_low_4
NF9160_low_4
[»] chr8 (4 HSPs)
chr8 (3-223)||(32507172-32507392)
chr8 (116-202)||(34770944-34771029)
chr8 (163-191)||(7008721-7008749)
chr8 (153-193)||(10758174-10758214)
[»] chr3 (5 HSPs)
chr3 (60-103)||(2719466-2719509)
chr3 (58-103)||(44747437-44747482)
chr3 (163-191)||(28779442-28779470)
chr3 (63-99)||(37273135-37273171)
chr3 (163-191)||(43875589-43875617)
[»] chr7 (4 HSPs)
chr7 (146-191)||(28691755-28691800)
chr7 (115-191)||(43854960-43855036)
chr7 (60-103)||(9038110-9038153)
chr7 (160-191)||(32157082-32157113)
[»] chr5 (7 HSPs)
chr5 (62-103)||(7319037-7319078)
chr5 (60-103)||(32942616-32942659)
chr5 (60-103)||(39105462-39105505)
chr5 (61-99)||(4619706-4619744)
chr5 (110-192)||(40159888-40159970)
chr5 (58-103)||(28776989-28777034)
chr5 (63-103)||(4014453-4014493)
[»] chr2 (11 HSPs)
chr2 (64-103)||(8017436-8017475)
chr2 (61-103)||(33319841-33319883)
chr2 (62-103)||(3049974-3050015)
chr2 (146-187)||(3102798-3102839)
chr2 (160-193)||(9595378-9595411)
chr2 (110-191)||(15120253-15120334)
chr2 (163-191)||(6561460-6561488)
chr2 (71-103)||(13737013-13737045)
chr2 (153-193)||(37419584-37419624)
chr2 (163-195)||(38388815-38388847)
chr2 (152-192)||(41880443-41880483)
[»] chr1 (3 HSPs)
chr1 (61-103)||(7137027-7137069)
chr1 (69-103)||(34952222-34952256)
chr1 (163-195)||(37617380-37617412)
[»] chr6 (2 HSPs)
chr6 (62-103)||(8365005-8365046)
chr6 (60-92)||(28088262-28088294)
[»] chr4 (3 HSPs)
chr4 (146-191)||(41433481-41433526)
chr4 (163-191)||(679414-679442)
chr4 (159-191)||(37575855-37575887)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 32507172 - 32507392
Alignment:
Q  3 ttttttgttacaatcagactcttccattgtattcaaacttgataatagggctgagaggctataaactgttttcataagctatcaaggagaacttatgaaa 102  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32507172 ttttttgttacaatccgactcttccattgtattcaaacttgataatagggctgagaggctataaactgttttcataagctatcatggagaacttatgaaa 32507271  T
Q  103 agacataataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaacatgacttttagt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32507272 agacataataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaatatgacttttagt 32507371  T
Q  203 aataaatgtgtacatgagttt 223  Q
    |||||||||||||||||||||    
T  32507372 aataaatgtgtacatgagttt 32507392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 34770944 - 34771029
Alignment:
Q  116 tgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaacatgacttttagt 202  Q
    |||||||||| | ||||||||||||  |  ||| || ||||  |||||||||||||||||||||||||  |||||||| ||||||||    
T  34770944 tgttttcataggatctctcaaacagtttcacaagtgcttatgctagcagataaactcaaataagtcaaaccaaacatg-cttttagt 34771029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 7008721 - 7008749
Alignment:
Q  163 agataaactcaaataagtcaattcaaaca 191  Q
    |||||||||||||||||||||||||||||    
T  7008721 agataaactcaaataagtcaattcaaaca 7008749  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 10758214 - 10758174
Alignment:
Q  153 ttatattagcagataaactcaaataagtcaattcaaacatg 193  Q
    |||| |||||||||||  |||||||||||||||||||||||    
T  10758214 ttatgttagcagataagttcaaataagtcaattcaaacatg 10758174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 2719466 - 2719509
Alignment:
Q  60 gctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  2719466 gctataaactgttttcataagctatcttggagaacttatgaaaa 2719509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 44747482 - 44747437
Alignment:
Q  58 aggctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||| ||||||||||||||||||  ||| ||||||||||||    
T  44747482 aggctataagctgttttcataagctatcttggaaaacttatgaaaa 44747437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 28779442 - 28779470
Alignment:
Q  163 agataaactcaaataagtcaattcaaaca 191  Q
    |||||||||||||||||||||||||||||    
T  28779442 agataaactcaaataagtcaattcaaaca 28779470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 37273135 - 37273171
Alignment:
Q  63 ataaactgttttcataagctatcaaggagaacttatg 99  Q
    |||||||||||||||||||||||  ||||||||||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatg 37273171  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 43875589 - 43875617
Alignment:
Q  163 agataaactcaaataagtcaattcaaaca 191  Q
    |||||||||||||||||||||||||||||    
T  43875589 agataaactcaaataagtcaattcaaaca 43875617  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 28691800 - 28691755
Alignment:
Q  146 caaatgtttatattagcagataaactcaaataagtcaattcaaaca 191  Q
    |||||| |||| ||||||||||||||||||||||||||| ||||||    
T  28691800 caaatgcttatgttagcagataaactcaaataagtcaatccaaaca 28691755  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 43855036 - 43854960
Alignment:
Q  115 ttgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaaca 191  Q
    |||||||||||||||||| |||| ||  | ||||||| |||| |||| ||||||  ||||||||| |||||||||||    
T  43855036 ttgttttcataagctctcccaaatagtgtcgcaaatgcttatgttagtagataagttcaaataagccaattcaaaca 43854960  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 9038110 - 9038153
Alignment:
Q  60 gctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||    
T  9038110 gctataaactgttttcataaactatcatggagaacttgtgaaaa 9038153  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 191
Target Start/End: Original strand, 32157082 - 32157113
Alignment:
Q  160 agcagataaactcaaataagtcaattcaaaca 191  Q
    ||||||||||||||||||||||||||||||||    
T  32157082 agcagataaactcaaataagtcaattcaaaca 32157113  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 7319078 - 7319037
Alignment:
Q  62 tataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  7319078 tataaactgttttcataagctatcttggagaacttatgaaaa 7319037  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 32942616 - 32942659
Alignment:
Q  60 gctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  32942616 gctataagctgttttcataagctatcttggagaacttatgaaaa 32942659  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 39105462 - 39105505
Alignment:
Q  60 gctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  39105462 gctataatctgttttcataagctatcttggagaacttatgaaaa 39105505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 4619706 - 4619744
Alignment:
Q  61 ctataaactgttttcataagctatcaaggagaacttatg 99  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  4619706 ctataaactgtcttcataagctatcatggagaacttatg 4619744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 40159888 - 40159970
Alignment:
Q  110 ataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaacat 192  Q
    |||| |||||||  |||||||| |||||||| ||  || |||||||| | || ||||||||| ||||||||||||| ||||||    
T  40159888 ataagttgtttttctaagctctttcaaacagtatcacacatgtttatgtaagtagataaacttaaataagtcaatttaaacat 40159970  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 28776989 - 28777034
Alignment:
Q  58 aggctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||| ||||||||||||||||||  |||||||| |||||||    
T  28776989 aggctataagctgttttcataagctatcttggagaactaatgaaaa 28777034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 4014493 - 4014453
Alignment:
Q  63 ataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaa 4014453  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 8017436 - 8017475
Alignment:
Q  64 taaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  8017436 taaactgttttcataagctatcttggagaacttatgaaaa 8017475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 33319883 - 33319841
Alignment:
Q  61 ctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||||||||||||| |||||  ||||||||||||||||    
T  33319883 ctataaactgttttcataaactatcttggagaacttatgaaaa 33319841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 3049974 - 3050015
Alignment:
Q  62 tataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||    
T  3049974 tataagctgttttcataagctatcatggagagcttatgaaaa 3050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 3102798 - 3102839
Alignment:
Q  146 caaatgtttatattagcagataaactcaaataagtcaattca 187  Q
    ||||||||||| | ||| ||||||||||||||||||||||||    
T  3102798 caaatgtttatgtgagcggataaactcaaataagtcaattca 3102839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 9595378 - 9595411
Alignment:
Q  160 agcagataaactcaaataagtcaattcaaacatg 193  Q
    ||||||||||||||||||| ||||||||||||||    
T  9595378 agcagataaactcaaataaatcaattcaaacatg 9595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 15120253 - 15120334
Alignment:
Q  110 ataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaaca 191  Q
    |||| |||||| ||||||||||| |||||||| |  ||| |||||||  ||| ||||||  |||||||||||||| ||||||    
T  15120253 ataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaaca 15120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 6561460 - 6561488
Alignment:
Q  163 agataaactcaaataagtcaattcaaaca 191  Q
    |||||||||||||||||||||||||||||    
T  6561460 agataaactcaaataagtcaattcaaaca 6561488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 13737013 - 13737045
Alignment:
Q  71 ttttcataagctatcaaggagaacttatgaaaa 103  Q
    |||||||||||||||| ||||||||||||||||    
T  13737013 ttttcataagctatcacggagaacttatgaaaa 13737045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 37419624 - 37419584
Alignment:
Q  153 ttatattagcagataaactcaaataagtcaattcaaacatg 193  Q
    |||||| || |||||||||||||||||||||| ||||||||    
T  37419624 ttatataagtagataaactcaaataagtcaatccaaacatg 37419584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 38388815 - 38388847
Alignment:
Q  163 agataaactcaaataagtcaattcaaacatgac 195  Q
    |||| ||||||||||||||||||||||||||||    
T  38388815 agatgaactcaaataagtcaattcaaacatgac 38388847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 41880483 - 41880443
Alignment:
Q  152 tttatattagcagataaactcaaataagtcaattcaaacat 192  Q
    ||||||| ||| ||||||||||||||||| |||||||||||    
T  41880483 tttatatcagccgataaactcaaataagttaattcaaacat 41880443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 7137069 - 7137027
Alignment:
Q  61 ctataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    |||||| ||||||||||||||||||  ||||||||||||||||    
T  7137069 ctataagctgttttcataagctatcttggagaacttatgaaaa 7137027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 34952222 - 34952256
Alignment:
Q  69 tgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||||||||||||| |||||||||||||||    
T  34952222 tgttttcataagctatcaaagagaacttatgaaaa 34952256  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 37617412 - 37617380
Alignment:
Q  163 agataaactcaaataagtcaattcaaacatgac 195  Q
    |||||||||||||||||||||| ||||||||||    
T  37617412 agataaactcaaataagtcaatccaaacatgac 37617380  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 8365046 - 8365005
Alignment:
Q  62 tataaactgttttcataagctatcaaggagaacttatgaaaa 103  Q
    ||||||||||||||||||||||||| || ||||| |||||||    
T  8365046 tataaactgttttcataagctatcatggtgaactgatgaaaa 8365005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 28088294 - 28088262
Alignment:
Q  60 gctataaactgttttcataagctatcaaggaga 92  Q
    ||||||||||||||||||||||||||| |||||    
T  28088294 gctataaactgttttcataagctatcatggaga 28088262  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 41433481 - 41433526
Alignment:
Q  146 caaatgtttatattagcagataaactcaaataagtcaattcaaaca 191  Q
    |||||| |||| | || |||||||||||||||||||||||||||||    
T  41433481 caaatgcttatgtcaggagataaactcaaataagtcaattcaaaca 41433526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 679414 - 679442
Alignment:
Q  163 agataaactcaaataagtcaattcaaaca 191  Q
    |||||||||||||||||||||||||||||    
T  679414 agataaactcaaataagtcaattcaaaca 679442  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 37575887 - 37575855
Alignment:
Q  159 tagcagataaactcaaataagtcaattcaaaca 191  Q
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T  37575887 tagcagataaactcaaataagtcaatccaaaca 37575855  T

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