View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9161_high_11 (Length: 350)

Name: NF9161_high_11
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9161_high_11
NF9161_high_11
[»] chr8 (1 HSPs)
chr8 (44-329)||(22845931-22846227)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 44 - 329
Target Start/End: Complemental strand, 22846227 - 22845931
Alignment:
Q  44 tatatttgtgaatatgtctaagcaatttaaattcgtgattgtgacaacacaaacactactctttcttggcaatttcatattttggatttggttcaccga- 142  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  22846227 tatatttgtgaatatgtctaaacaatttaaattcgtgattgtgacaacacaaacattactctttcttggcaatttcatattttggatttggttcaccgat 22846128  T
Q  143 -tataattgttagagaaacattagttatcccaattcgaaaaggggtgagtttccttagaaagatggaaaagctgaat---------ccttgttttcatta 232  Q
     |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  22846127 atataattgttagagaagcattagttatcccaattcgaaaatgggtgagtttccttagaaagatggaaaagctgaataattacttgccttgttttcatta 22846028  T
Q  233 cacgatagaatacaaacaccgttataaagtaacaaactccctacattcacgagaaactgcataatagacacgacataatttaaaagaggtttaaatg 329  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||    
T  22846027 cacgatagaatacaaacaccattataaagtaacaaactccctacattcatgagaaactgcataatagaaacgacataatttaaatgaggtttaaatg 22845931  T

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