View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9161_high_9 (Length: 374)
Name: NF9161_high_9
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 38877741 - 38877395
Alignment:
| Q |
1 |
tctatatttacttattttcaaaactacgggtcttacaattcgcaactctccaattagacaacagctgcctagctcgctccaatatagcttgggttgtctc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877741 |
tctatatttaattattttcaaaactacgggtcttacaattcgcaactctccaattagacaacagctgcctagctcgctccaatatagcttgggttgtctc |
38877642 |
T |
|
| Q |
101 |
cgtaacattctgcaataaccttatattgtgactcttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877641 |
cgtaacattctgcaataaccttatattgtgactcttccacatactccacacaactgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagc |
38877542 |
T |
|
| Q |
201 |
gcaaaagtgatttcagccgctgtgttattcgtagcatcaccgaattcaccttgcttaagagaaaattatcctaccaaaccttccttgttcacggacaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38877541 |
gcaaaagtgatttcagccgctgtgttattcgtagcatcaccgaattcaccttgcttaagagaaaattatcctgccaaaccttccttgttcacggacaatc |
38877442 |
T |
|
| Q |
301 |
aaacaacacatgactcacatcctcgtaactttcttcacacataacac |
347 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877441 |
aaacaacacattactcacatcctcgtaactttcttcacacataacac |
38877395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 348
Target Start/End: Original strand, 24408106 - 24408288
Alignment:
| Q |
167 |
ctcagcttgaccatgtgacagttcctgcagcagcgcaaaagtgatttcagccgctgtgttattcgt-agcatcaccgaattcaccttgcttaagagaaaa |
265 |
Q |
| |
|
|||||||||| |||| ||| ||| || | || ||||||| ||| |||||||||||||||||| ||||| ||||||||||| || |||| || || |
|
|
| T |
24408106 |
ctcagcttgagcatgagacgtttcttgtaacaacgcaaaaatgaactcagccgctgtgttattccacagcattaccgaattcactttacttataagcaag |
24408205 |
T |
|
| Q |
266 |
ttatcctaccaaaccttccttgttcacggacaatcaaacaacacatgactcacatcctcgtaactttcttcacacataacaca |
348 |
Q |
| |
|
| |||| |||||| ||||| | | |||||| |||||||| ||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
24408206 |
ctgtcctgccaaactttcctcgctggcggacagtcaaacaaaacatgactcgcatcctcgtaacattcttcacacataacaca |
24408288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 348
Target Start/End: Complemental strand, 24411417 - 24411281
Alignment:
| Q |
213 |
tcagccgctgtgttattcgt-agcatcaccgaattcaccttgcttaagagaaaattatcctaccaaaccttccttgttcacggacaatcaaacaacacat |
311 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||| ||||||| || || |||| |||||| ||||| | || |||| | |||||||| |||| |
|
|
| T |
24411417 |
tcagccgcggtgttattccacagcattaccgaattcactttgcttagaagcaagccgtcctgccaaactttcctcgctcgcggatagtcaaacaaaacat |
24411318 |
T |
|
| Q |
312 |
gactcacatcctcgtaactttcttcacacataacaca |
348 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24411317 |
gactcacatcctcgtaacattcttcacacataacaca |
24411281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 135 - 356
Target Start/End: Complemental strand, 5777771 - 5777562
Alignment:
| Q |
135 |
ttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcgcaaaagtgatttcagccgctgtgtta-ttcgta |
233 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||| |
|
|
| T |
5777771 |
ttccacaaactccacacaaccattgcaaacaactcaccttgaacatgtgacagttcttgcagcaacgcaaaagtgatttcagccgctgtgttattttgta |
5777672 |
T |
|
| Q |
234 |
gcatcaccgaattcaccttgcttaagagaaaattatcctaccaaaccttccttgttcacggacaatcaaacaacacatgactcacatcctcgtaactttc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5777671 |
gcatcaccgaattcaccttgcttaagag-------------caaactttccttgctcgcggacaatcaaacaacacatgactcacatcctcgtagctttc |
5777585 |
T |
|
| Q |
334 |
ttcacacataacacacatggaag |
356 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
5777584 |
ttcacacataacacatatggaag |
5777562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 28842228 - 28842345
Alignment:
| Q |
232 |
tagcatcaccgaattcaccttgcttaagagaaaattatcctaccaaaccttccttgttcacggacaatcaaacaacacatgactcacatcctcgtaactt |
331 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||| || | |||||| ||||||| || ||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
28842228 |
tagcattaccgaattcaccttgcttagaagcaaattgtcttgccaaactttccttgctcgcgggcaatcaaacaacacatgactcacatctttataactt |
28842327 |
T |
|
| Q |
332 |
tcttcacacataacacac |
349 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
28842328 |
tcttcacacgtaacacac |
28842345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 15662425 - 15662458
Alignment:
| Q |
130 |
gactcttccacaaactccacacaattgttgcaaa |
163 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
15662425 |
gacttttccacaaactccacacaattgttgcaaa |
15662458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 350
Target Start/End: Original strand, 30092485 - 30092789
Alignment:
| Q |
46 |
ctctccaattagacaacagctgcctagctcgctccaatatagcttgggttgtctccgtaacattctgcaataaccttatattgtgactcttccacaaact |
145 |
Q |
| |
|
||||||| ||| | ||||||||||| || |||||||||| || |||| ||| ||||||||||||||| |||||| || |||| | | |||||||||| |
|
|
| T |
30092485 |
ctctccatttaaataacagctgcctcgcgtgctccaatatggcctgggctgtttccgtaacattctgccataaccgtaaattgcggtttgtccacaaact |
30092584 |
T |
|
| Q |
146 |
ccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcgcaaaagtgatttcagccgctgtgttattcgt-agcatcaccgaa |
244 |
Q |
| |
|
||| | | ||||||||||||| ||||||| |||||||||| || || | || |||||| ||||||||||| ||||||| || | ||||| |||||| |
|
|
| T |
30092585 |
ccaaagtaccgttgcaaacaactgagcttgagcatgtgacagatcttgtaacaatgcaaaaatgatttcagccactgtgttgttatttagcattaccgaa |
30092684 |
T |
|
| Q |
245 |
ttcaccttgcttaagagaaaattatcctaccaaaccttccttgttcacggacaatcaaacaacacatgactcacatcctcgtaactttcttcacacataa |
344 |
Q |
| |
|
|||||||| |||| || ||||| || | |||||| ||||||| || ||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
30092685 |
ttcaccttacttagaagcaaattgtc-tgccaaactttccttgctcgcgggcaatcaaacaacacatgactcacatctccataactttcttcacacataa |
30092783 |
T |
|
| Q |
345 |
cacaca |
350 |
Q |
| |
|
|||||| |
|
|
| T |
30092784 |
cacaca |
30092789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 351
Target Start/End: Complemental strand, 25938481 - 25938232
Alignment:
| Q |
102 |
gtaacattctgcaataaccttatattgtgactcttccacaaactccacacaattgttgcaaacaactcagcttgaccatgtgacagttcctgcagcagcg |
201 |
Q |
| |
|
|||||||||||| | ||||| | ||| | ||||||||||||||||| | || ||| |||||||||||| |||| | ||||||||| ||||||| || |
|
|
| T |
25938481 |
gtaacattctgccacaacctcaaattacggctcttccacaaactccaaagaaccgtt-caaacaactcagtttgaacgaatgacagttcttgcagcaacg |
25938383 |
T |
|
| Q |
202 |
caaaagtgatttcagccgctgtgtta-ttcgtagcatcaccgaattcaccttgcttaagagaaaattatcctaccaaaccttccttgttcacggacaatc |
300 |
Q |
| |
|
|||| |||||||||||| ||||||| ||| |||||| ||| |||||||||||| || | ||| ||||| ||| || ||||||| |||||||||||| |
|
|
| T |
25938382 |
caaagatgatttcagccgttgtgttatttcctagcattaccaaattcaccttgcctacaaagaaacaatcctgccatactttccttgctcacggacaatc |
25938283 |
T |
|
| Q |
301 |
aaacaacacatgactcacatcctcgtaactttcttcacacataacacacat |
351 |
Q |
| |
|
||||| ||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
25938282 |
aaacatcacatgacttgtgtcttcataactttcttcacacataacacacat |
25938232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 30274429 - 30274486
Alignment:
| Q |
292 |
cggacaatcaaacaacacatgactcacatcctcgtaactttcttcacacataacacac |
349 |
Q |
| |
|
|||||||||||| |||||| || || ||||||||||||| || ||||||||| ||||| |
|
|
| T |
30274429 |
cggacaatcaaataacacacgagtcgcatcctcgtaactctcctcacacatagcacac |
30274486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 11115493 - 11115414
Alignment:
| Q |
269 |
tcctaccaaaccttccttgttcacggacaatcaaacaacacatgactcacatcctcgtaactttcttcacacataacaca |
348 |
Q |
| |
|
|||| |||||||||||| | || |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
11115493 |
tcctgccaaaccttcctcgctcgcggacaatcaaacaacacgtgactcgcatcctcataactttcttcacacataacaca |
11115414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University