View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_11 (Length: 464)
Name: NF9161_low_11
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 19125044 - 19125353
Alignment:
| Q |
18 |
aatcaatacttatgatccttgtttggcattaataacaatgcagagatcaatttagcagtggcaagacaaaaaagggaaattccgatattgcgatgtaaat |
117 |
Q |
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| T |
19125044 |
aatcaatacttatgatccttgtttggcattaataacaatgcagagatcaatttagcagtggcaagacaaaaaagggaaattccgatattgcgatgtaaat |
19125143 |
T |
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| Q |
118 |
tgaattgaatccaatcatttcatttttgtctctaatagcatgtttatattcatatttatgtcaatgctattttcttttatgtttaaaatatgttcaaatt |
217 |
Q |
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| T |
19125144 |
tgaattgaatcgaatcatttcatttttgtctctaatagcatgtttatattcatatttatgtcaatgctattttcttttatgtttaaaatatgttcaaatt |
19125243 |
T |
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| Q |
218 |
atgtctatctttttttaaaaggacaaattatgtcgannnnnnnnnnnnnnncaacaataaattttgtcgatttattatgtccaaattatgttaaagttat |
317 |
Q |
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| T |
19125244 |
atgtctatctttttttaaaaggacaaattatgtcga---ttttttttttttcaacaataaattttgtcgatttattatgtccaaattatgttaaagttat |
19125340 |
T |
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| Q |
318 |
gtccattgtggat |
330 |
Q |
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| T |
19125341 |
gtccattgtggat |
19125353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 19125403 - 19125474
Alignment:
| Q |
379 |
aatatagattggtctaagcctaaaatcactcttacatttacttttcatcgcttatcattttcttgtctgatg |
450 |
Q |
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| T |
19125403 |
aatatagattggtctaagcctaaaatcactcttacatttacttttcatcgcttatcattttcttgtctgatg |
19125474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 19117865 - 19117959
Alignment:
| Q |
140 |
tttttgtctctaatagcatgtttatattcatatttatgtcaatgctattttcttttatgtttaaaatatgttcaaattatgtctatcttttttta |
234 |
Q |
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| T |
19117865 |
tttttgtctcaaatagcatgtttatattcacatttatgtcaaatctattttctttaatgtttaagatatgttcaaattatgtctatcttttttta |
19117959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 15818842 - 15818924
Alignment:
| Q |
140 |
tttttgtctctaatagcatgtttatattcatatttatgtcaatgctattttc-ttttatgtttaaaatatgttcaaattatgt |
221 |
Q |
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| T |
15818842 |
tttttgtctctaatagcgagtttatgttcgtatttatgtaaaagttcttatcattttatatttaaaatgtgttcaaattatgt |
15818924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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