View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_12 (Length: 427)
Name: NF9161_low_12
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Original strand, 38013259 - 38013656
Alignment:
| Q |
10 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaacaataaatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
38013259 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacacagactgctgcaacaacaaatg |
38013358 |
T |
|
| Q |
110 |
gaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38013359 |
gaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctcc |
38013458 |
T |
|
| Q |
210 |
atcgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactattctcccaccgtccatcttcaaactcaaaaaacttg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
38013459 |
atcgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactatcctcccaccgtccatcttcaaactc--aaaactta |
38013556 |
T |
|
| Q |
310 |
agtacctcgccctcagatacaccaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaact |
409 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38013557 |
agtacctcaccctcagatacaccaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaact |
38013656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 28 - 409
Target Start/End: Complemental strand, 37697804 - 37697430
Alignment:
| Q |
28 |
tactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatcca---aacactgactgctgcaacaataaatggaaaggtgtctcatg |
124 |
Q |
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||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||| ||||||||||||| | |||||||| ||||||||||| |
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| T |
37697804 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggtgtctcatg |
37697705 |
T |
|
| Q |
125 |
caactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccct |
224 |
Q |
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| |||||| ||||||| | ||||||| |||||| |||| |||| ||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
37697704 |
cgactcag------------accgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccct |
37697617 |
T |
|
| Q |
225 |
ttccttaccttactctctctctcccacatccccaaccttgtcggcactattctcccaccgtccatcttcaaactcaaaaaacttgagtacctcgccctca |
324 |
Q |
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|| ||| | |||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||||| || ||||| |||||| |||||| |
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| T |
37697616 |
tttcttgacgatttctctctctcccgcatccccaacctcgtcggcacta---tcccaccgtccatctccaaactcaccaatcttgattacctcaccctca |
37697520 |
T |
|
| Q |
325 |
g--atac---accaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaact |
409 |
Q |
| |
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| |||| |||| |||||||||||||||||||||||| || ||| | || ||||| || ||||| ||||||||| |||||||||||| |
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| T |
37697519 |
gccataccataccagcatctccggcgagataccaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaact |
37697430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 37989542 - 37989634
Alignment:
| Q |
10 |
cagatgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaaca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
37989542 |
cagatgacaaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaaca |
37989634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 37993735 - 37993823
Alignment:
| Q |
13 |
atgacaaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaac |
101 |
Q |
| |
|
||||||||| |||||| | |||||||||||| ||||||||||||| | | ||||||||||||||||| ||| || |||||||||||| |
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| T |
37993735 |
atgacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggattcaactaccgactgctgcaac |
37993823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 37994043 - 37994089
Alignment:
| Q |
330 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaac |
376 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||| |||||||||| |
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| T |
37994043 |
accaacatctccggcgagatacctaacactctctcagagatcaaaac |
37994089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 37993874 - 37993945
Alignment:
| Q |
158 |
ccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccctttcct |
229 |
Q |
| |
|
|||||||||| || |||| ||||| ||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
37993874 |
ccttgatctccaggacctcgaccttcctcaccctgttccaattccaccctccatattcaacctccctttcct |
37993945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 376
Target Start/End: Original strand, 37989859 - 37989905
Alignment:
| Q |
330 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaac |
376 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||| |
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| T |
37989859 |
accaacatctccggggagataccttacactctctcacagatcaaaac |
37989905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 376
Target Start/End: Original strand, 25326330 - 25326514
Alignment:
| Q |
192 |
gttccaattccaccctccat---cgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactattctcccaccgtcca |
288 |
Q |
| |
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|||| ||||||||||||||| | |||||||||||||| | | ||| |||||| || | ||||||||||||| || |||||||| ||| || |||| |
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| T |
25326330 |
gttcaaattccaccctccatattcactaacctccctttcataaactttctctctatcgacaacatccccaacctcgttggcactat---cccgccttcca |
25326426 |
T |
|
| Q |
289 |
tcttcaaactcaaaaaacttgagtacctcgccctcagatacaccaacatctccggcgagataccaaacaccctctcacagatcaaaac |
376 |
Q |
| |
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||| |||||||| ||||||||| |||| | |||| ||| | |||||||||||||||||||||| | ||||||||||| ||||| |
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|
| T |
25326427 |
tctccaaactcaccaaacttgaggtcctcatcatcagcggcacaagcatctccggcgagataccaaactcactctcacagattaaaac |
25326514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 18138354 - 18138386
Alignment:
| Q |
15 |
gacaaaagaaccctactccaaatcaaaaaagaa |
47 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
18138354 |
gacaaaagaaccctactccaaatcaagaaagaa |
18138386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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