View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_15 (Length: 425)
Name: NF9161_low_15
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 238 - 410
Target Start/End: Original strand, 36550284 - 36550456
Alignment:
| Q |
238 |
cattttttctctgttgaaaacactcgaactttgcagcttcaaaggatgaggaacttagtaaaaatttcacataaatattatgacttgaagcttactcagt |
337 |
Q |
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| T |
36550284 |
cattttttctctgttgaaaacactcgaactttgcagcttcaaaggatgaggaacttagtaaaaatttcacataaatattatgacttgaagcttactcagt |
36550383 |
T |
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| Q |
338 |
tggaactttatactgagggtatcgtttgctgagaaactttgcaagctcgggaacactggtattgtgagcacag |
410 |
Q |
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| T |
36550384 |
tggaactttatactgagggtatcgtttgctgagaaactttgcaagctcgggaacactggtattgtgagcacag |
36550456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 36550064 - 36550215
Alignment:
| Q |
16 |
tcaaaagtttcagcaatactatgcttgaaactgaaaccttcttcgataagctttccagaagagattatcaactttgccttgctggggaaatcatcaaatc |
115 |
Q |
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| T |
36550064 |
tcaaaagtttcagcaatactatgcttgaaactgaaaccttctttgataagctttccagaagagattatcaactttgccttgctggggaaatcatcaaatc |
36550163 |
T |
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| Q |
116 |
tgcaattcaaaaatgatactttggctttagtagaaactagtgctcatgaagg |
167 |
Q |
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| T |
36550164 |
tgcaattcaaaaatgatactttggctttagtagaaactagtgctcatgaagg |
36550215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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