View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_16 (Length: 414)
Name: NF9161_low_16
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 41 - 392
Target Start/End: Original strand, 4141222 - 4141574
Alignment:
| Q |
41 |
ataattctcatcaacagcaaacaaaataattgaaaagcaagaacaaaacaactaataaagtgacacaatctcatccctaggacatagatgagctcaattt |
140 |
Q |
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| T |
4141222 |
ataattctcatcaacagcaaacaaaataattgaaaagcaagaacaaaacaactaataaagtgacacaacctcatccctaggacatagatgagctcaattt |
4141321 |
T |
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| Q |
141 |
taaaactttatatcactctttcatcaaaaacatttcaagaagcaatctcatgtcaagaacatataacttacgattaaacaacaaagttttagaacataag |
240 |
Q |
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| T |
4141322 |
taaaactttatatcactctttcatcaaaaacatttcaagaagcaatctcatgtcaagaacatataacttacgattaaacaacaaagttttagaaaataag |
4141421 |
T |
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| Q |
241 |
gactagtatatccatgttctgaaattctaaaagctcaaagtatccttaggtactgagacttccaaacatacccaagctcatt--aacataaaaaatttaa |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4141422 |
gactagtatatccatgttctgaaattctaaaagctcaaagtatcc-caggtactgagacttccaaacatacccaagctcattaaaacataaaaaatttaa |
4141520 |
T |
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| Q |
339 |
gattgcatttcaaaaatcaagaaatctttatggtgtcattttatccatatagtc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141521 |
gattgcatttcaaaaatcaagaaatctttatggtgtcattttatccatatagtc |
4141574 |
T |
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