View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9161_low_2 (Length: 657)
Name: NF9161_low_2
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Original strand, 18444215 - 18444845
Alignment:
| Q |
1 |
cacaaaggtatcccgcctcaacgagatgttcaacgcgtttcattgtttaggagacaatgtaaaatacagccattcaatgttacacaaacaacgtattccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18444215 |
cacaaaggtatcccgcctcaacgagatgttcaacgtgtttcatcgtttaggagacaatgtaaaatacagccattcaatgttacacaaacaacgtattccc |
18444314 |
T |
|
| Q |
101 |
taaatatattggacagtctaaaaatactattacaacaacagaaaaatgtcgacgttctagtaaagccgtcctcggcatttcaaaatacaaagacaaggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
18444315 |
taaatatattggacagtctaaaaatactattacaacaacagaaaaatgtcgaggttctagtaaagccatcctcggtatttcaaaatacaaagacaaggag |
18444414 |
T |
|
| Q |
201 |
atccttctctgagcacaagctcatagtgataattatgtcaatttgttatcaagttgcatcatgttannnnnnngtcttatcaaatcaacttacacctgtt |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
18444415 |
atccttctctgggcacaagctcatagtgataattatgtcaatttgttatcaagttgcatcatgttatttttttgtcttatcaaatcaatttacacctgtt |
18444514 |
T |
|
| Q |
301 |
attgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18444515 |
attgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctc------------catatggttaacacgagcattgata |
18444602 |
T |
|
| Q |
401 |
tcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactaca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18444603 |
tcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaaaagaagaaactaca |
18444702 |
T |
|
| Q |
501 |
tcttggaagaaatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgcaaaat---- |
596 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
18444703 |
tcttggaagaaatgtaaaccttcggcgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgcgcacacatgaacgtgccgcgcaaaatagcc |
18444802 |
T |
|
| Q |
597 |
agcctcaccagcctttacttcccatccatgttaatcggataac |
639 |
Q |
| |
|
|||||||| || | ||||||||||||||||| ||||||||||| |
|
|
| T |
18444803 |
agcctcacaagtccttacttcccatccatgtgaatcggataac |
18444845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 293 - 615
Target Start/End: Original strand, 33486491 - 33486813
Alignment:
| Q |
293 |
cacctgttattgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgag |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| || |||||||| |||||| |
|
|
| T |
33486491 |
cacctgttattgatgaacctagacacatttccatatgtagtagaatcaatgacatatcggggatgtccttcgaccaatctactcgtatggttagcacgag |
33486590 |
T |
|
| Q |
393 |
cattgatatcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaag |
492 |
Q |
| |
|
||| || || || |||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
33486591 |
catcaatgtctaagaaataactgcaattttctttgctatatttggtattaaaacaggccaagtcagcaaaaaggaagaaacatcaagcaaacaaaagaag |
33486690 |
T |
|
| Q |
493 |
aaactacatcttggaagaaatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgca |
592 |
Q |
| |
|
||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||| | |||||||||| ||||| |||||||| ||||||||| ||| |
|
|
| T |
33486691 |
aaattacgtcttggaataaatgtaaaccttccgcgtctgttgtgtgcctcctgctgctctaaaacttcaccaatgtactcacacacaaacgtgccacgca |
33486790 |
T |
|
| Q |
593 |
aaatagcctcaccagcctttact |
615 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
33486791 |
aaatagcttcaccagcccttact |
33486813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 293 - 623
Target Start/End: Original strand, 33514849 - 33515176
Alignment:
| Q |
293 |
cacctgttattgatgaacctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgag |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || | || |||| ||||| | |||||| |||||||||| |
|
|
| T |
33514849 |
cacctgttattgatgaacctagacacatttccatatctagtagaatcaatgacatatcgagcctctctttcgatcaatcgactcatatcattaacacgag |
33514948 |
T |
|
| Q |
393 |
cattgatatcaaacaaattactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaag |
492 |
Q |
| |
|
||| | |||| | |||| | ||||| |||||| | |||||||||||| | | || ||| ||||||||||| ||||| |||||| |||| || | | |
|
|
| T |
33514949 |
catcaacatcatagaaataatcgcaatgttcttttccatatctggtattgacacagaccatgtcagtaaaaattaagaatcatcaaccaactaa---atg |
33515045 |
T |
|
| Q |
493 |
aaactacatcttggaagaaatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgca |
592 |
Q |
| |
|
||| || |||||| |||||||||||||||| |||||||||| ||||||| |||| | ||||| || | ||||| |||||||| || ||||| || |
|
|
| T |
33515046 |
aaattatatcttgaaagaaatgtaaacctttcacgtctgttgcgtgcctcttgctcgtctaaaacctctccaatgtactcacacacaaatgtgccgcgcg |
33515145 |
T |
|
| Q |
593 |
aaatagcctcaccagcctttacttcccatcc |
623 |
Q |
| |
|
|||||||||||| |||| |||| ||||||| |
|
|
| T |
33515146 |
aaatagcctcacaagcccttacaccccatcc |
33515176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 33485737 - 33485836
Alignment:
| Q |
82 |
acacaaacaacgtattccctaaatatattggacagtctaaaaatactattacaacaacagaaaaatgtcgacgttctagtaaagccgtcctcggcatttc |
181 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||| | ||||| ||||||| |
|
|
| T |
33485737 |
acacaaacaacttattcccgcaatatactggacagtctaaaa---cacttacaacaacagaaaaatgtcgaggttctagtaaaggcttcctcagcatttc |
33485833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 33485619 - 33485699
Alignment:
| Q |
6 |
aggtatcccgcctcaacgagatgttcaacgcgtttcattgtttaggagacaatgtaaaatacagccattcaatgttacaca |
86 |
Q |
| |
|
|||||||| || |||| |||||||||||| || |||| ||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
33485619 |
aggtatcctgcatcaaatagatgttcaacgtgtctcatcttttaggagacaatctaaaatacaaccattcaatgttacaca |
33485699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 73 - 235
Target Start/End: Original strand, 55443557 - 55443716
Alignment:
| Q |
73 |
ttcaatgttacacaaacaacgtattccctaaatatattggacagtctaaaaatactattacaacaacagaaa-aatgtcgacgttctagtaaagccgtcc |
171 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||| ||||| |||||||| |||||||||||| |||| ||| |||| |||||||||||| ||||| |
|
|
| T |
55443557 |
ttcaatgttacaaaaacaacctattccctaaatg----ggacaatctaaaaacactattacaaca---gaaagaatttcgaggttctagtaaaggcgtcc |
55443649 |
T |
|
| Q |
172 |
tcggcatttcaaa-at--acaaagacaaggagatccttctctgagcacaagctcatagtgataatta |
235 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
55443650 |
tcggcattttgaagatccacaaagacaaggagatccttttccaagaacaagctcatagtgataatta |
55443716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 313 - 623
Target Start/End: Original strand, 55444334 - 55444641
Alignment:
| Q |
313 |
agacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaatta |
412 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||| |||| |||| |||| ||||| | |||| | ||||||||||||| | | || | |||| | |
|
|
| T |
55444334 |
agacacatttccatatctagtagaatcaatgatatattgggcctgtctttcgatcaatcgactcatgtcattaacacgagcatcaacaacatagaaataa |
55444433 |
T |
|
| Q |
413 |
ctgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaagaaa |
512 |
Q |
| |
|
||||||| ||||| | ||| |||||||| | |||| ||| ||||||||||| ||||||||||| |||| || || |||||| |||||| |||||| |
|
|
| T |
55444434 |
ctgcaatgttcttctccataactggtattgacatagaccatgtcagtaaaaatccagaaacatcaaccaactaa---aataaactatatcttgaaagaaa |
55444530 |
T |
|
| Q |
513 |
tgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgcaaaatagcctcaccagccttt |
612 |
Q |
| |
|
| |||||||| | |||||| |||||||| |||| || ||||| || | ||||| |||||||| || || || || |||||||||| |||||| || |
|
|
| T |
55444531 |
tttaaaccttttgcatctgttgtgtgcctcttgctcttctaaaacctctccaatgtactcacacacaaatgttccgcgcgaaatagcctcgccagccctt |
55444630 |
T |
|
| Q |
613 |
acttcccatcc |
623 |
Q |
| |
|
|| ||||||| |
|
|
| T |
55444631 |
acaccccatcc |
55444641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 55443465 - 55443533
Alignment:
| Q |
18 |
tcaacgagatgttcaacgcgtttcattgtttaggagacaatgtaaaatacagccattcaatgttacaca |
86 |
Q |
| |
|
|||| ||||||||||| | || |||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
55443465 |
tcaatgagatgttcaatgtgtctcatcttttaggagacaatctaaaatacaatcattcaatgttacaca |
55443533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University