View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_27 (Length: 319)
Name: NF9161_low_27
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 9431190 - 9431484
Alignment:
| Q |
17 |
gttggtacctagaagagtcattggtttctaaactagcagtcggaattccatcggacgctacaatcatatgacgatattgagaagctatgtgtttgttctt |
116 |
Q |
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| T |
9431190 |
gttggtacctagaagagtcattggtttctaaactagcagtcggaattccatcggacgctacaatcatatgacgatattgagaagctatgtgtttgttctt |
9431289 |
T |
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| Q |
117 |
ccgtctccctgcaccaacagcaacgtttctcattgttccaccgttggtccaatatctgtgacaactccgacaaaaatgccgaggttgattgacattgtag |
216 |
Q |
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| T |
9431290 |
ccgtctccctgcaccaacagcaacgtttctcattgttccaccgttggtccaatatctgtgacaactccgacaaaaatgccgaggttgattgacattgtag |
9431389 |
T |
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| Q |
217 |
ttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaatcttgtctggtttctttaggactttgtcttgatctgtgct |
311 |
Q |
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| T |
9431390 |
ttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaatcttgtctggtttctttaggactttgtcttgatctgtgct |
9431484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 60 - 311
Target Start/End: Original strand, 9423902 - 9424153
Alignment:
| Q |
60 |
aattccatcggacgctacaatcatatgacgatattgagaagctatgtgtttgttcttccgtctccctgcaccaacagcaacgtttctcattgttccaccg |
159 |
Q |
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| T |
9423902 |
aattccaccggaagctacaatcatgtggcgatattgagaagctatctgcttgttcctccgtctccctgcaccgaaaggaacgtttctcatttttccaccg |
9424001 |
T |
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| Q |
160 |
ttggtccaatatctgtgacaactccgacaaaaatgccgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttg |
259 |
Q |
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| T |
9424002 |
gcagtccaatatctatgacatttccgacaaaaatgccgaggttgactgacattatagttattgaaataacaaaatttcgtgtcgaaactgttgcatcttg |
9424101 |
T |
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| Q |
260 |
gacattgaacaatcttgtctggtttctttaggactttgtcttgatctgtgct |
311 |
Q |
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| T |
9424102 |
gacattgaacaattttgtcgggtttctttaagactttgtcttgatctgtgct |
9424153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 308
Target Start/End: Complemental strand, 33752157 - 33751940
Alignment:
| Q |
91 |
tattgagaagctatgtgtttgttcttccgtctccctgcaccaacagcaacgtttctcattgttccaccgttggtccaatatctgtgacaactccgacaaa |
190 |
Q |
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| T |
33752157 |
tattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcaga |
33752058 |
T |
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| Q |
191 |
aatgccgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaatcttgtctggtttctttag |
290 |
Q |
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| T |
33752057 |
aatgtcgaggttgattgacattatagttgttgaaataacaaaacttggtgtcccaactgttgcatcgcggacactgaacaatcttgtctggtttctttaa |
33751958 |
T |
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| Q |
291 |
gactttgtcttgatctgt |
308 |
Q |
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| T |
33751957 |
gagtttatcttgatctgt |
33751940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 31771916 - 31771804
Alignment:
| Q |
130 |
ccaacagcaacgtttctcattgttccaccgttggtccaatatctgtgacaactccgacaaaaatgccgaggttgattgacattgtagttgttgaaataac |
229 |
Q |
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| T |
31771916 |
ccaacaggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaac |
31771817 |
T |
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| Q |
230 |
aaaattttgtgtc |
242 |
Q |
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| T |
31771816 |
aaaatttggtgtc |
31771804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 18198227 - 18198135
Alignment:
| Q |
196 |
cgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaatcttgtctggtttcttt |
288 |
Q |
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| T |
18198227 |
cgaggctgtttgacgttgtagttgttgtagtagcaaaattttgtgtccgtgcttttgcatcttggacatggaacaacttggtctggtttcttt |
18198135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 18230844 - 18230777
Alignment:
| Q |
205 |
ttgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaat |
272 |
Q |
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| T |
18230844 |
ttgacgttgtagttgttatagtaacaaaattttgtgtccatgcttttgcatcttggacagggaacaat |
18230777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 4822239 - 4822328
Alignment:
| Q |
175 |
tgacaactccgacaaaaatgccgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacat |
264 |
Q |
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| T |
4822239 |
tgacaactcttacaaaaatgtcttggttgattaacgttgtaattattgaaataacaaaatttagtttccatactcttgcatcttggacat |
4822328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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