View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9161_low_34 (Length: 216)

Name: NF9161_low_34
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9161_low_34
NF9161_low_34
[»] chr3 (8 HSPs)
chr3 (1-216)||(23035976-23036191)
chr3 (8-216)||(23038854-23039062)
chr3 (3-216)||(23148566-23148779)
chr3 (3-216)||(23145728-23145941)
chr3 (8-216)||(23016875-23017083)
chr3 (32-216)||(23032551-23032735)
chr3 (10-214)||(23024087-23024291)
chr3 (8-216)||(23139859-23140067)
[»] scaffold0554 (1 HSPs)
scaffold0554 (8-216)||(6733-6941)
[»] chr6 (1 HSPs)
chr6 (45-216)||(21779663-21779834)
[»] scaffold0059 (1 HSPs)
scaffold0059 (61-216)||(62019-62174)
[»] chr1 (3 HSPs)
chr1 (39-216)||(12609749-12609926)
chr1 (63-216)||(12636869-12637022)
chr1 (39-216)||(15885941-15886118)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23035976 - 23036191
Alignment:
Q  1 catgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23035976 catgcagaggatgataaacagaagaaaacaataaaagttcatcctttcttctcattgtggctccaaattcgtcagtcatgtccaattcttcacttttgat 23036075  T
Q  101 tccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccg 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036076 tccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccg 23036175  T
Q  201 gaaccaaaaggaatgt 216  Q
    | ||||||||||||||    
T  23036176 gcaccaaaaggaatgt 23036191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 23038854 - 23039062
Alignment:
Q  8 aggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccacta 107  Q
    ||||||||||||| ||| |||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||||| ||||||||| ||||||||||     
T  23038854 aggatgataaacaaaagaaaacaataaaagatcatcttttcttctcattgtggctccgaattcatcagtcatatccaagtcttcacttctgattccactt 23038953  T
Q  108 ggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaa 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  23038954 ggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaa 23039053  T
Q  208 aaggaatgt 216  Q
    |||||||||    
T  23039054 aaggaatgt 23039062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 23148566 - 23148779
Alignment:
Q  3 tgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattc 102  Q
    |||| ||||||||||||| ||||  |||||||||| ||||| ||||| ||||  |||  ||||||||| |||||||| |||| |||||||| | | ||||    
T  23148566 tgcaaaggatgataaacaaaagggcacaataaaagatcatcttttctcctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattc 23148665  T
Q  103 cactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccgga 202  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||     
T  23148666 cactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatatttctcaaaccaaatatgctccctgggcatattcttcttccggc 23148765  T
Q  203 accaaaaggaatgt 216  Q
    ||||||||||||||    
T  23148766 accaaaaggaatgt 23148779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 23145728 - 23145941
Alignment:
Q  3 tgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattc 102  Q
    |||| ||||| ||||||| ||||  |||||||||| ||||| ||||||||||  |||  ||||||||| |||||||| |||| |||||||| | | ||||    
T  23145728 tgcaaaggattataaacaaaagggcacaataaaagatcatcttttcttctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattc 23145827  T
Q  103 cactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccgga 202  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||  ||||||||| |||||||||||||||||||||| |||||||||||||| |     
T  23145828 cactaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtgctccctggacatattcttcttccagc 23145927  T
Q  203 accaaaaggaatgt 216  Q
    ||||||||||||||    
T  23145928 accaaaaggaatgt 23145941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 23016875 - 23017083
Alignment:
Q  8 aggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccacta 107  Q
    ||||||||||||| |||| || | |||||| ||||| ||||| ||||| ||| |||||||||  ||||||||||||| ||| |||| |||||||||||      
T  23016875 aggatgataaacaaaaggcaatagtaaaaggtcatcttttctcctcattgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccaccg 23016974  T
Q  108 ggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||| ||||| ||||| |||||||||||||||||   |||||    
T  23016975 ggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactcccagggcatattcttcttccaccaccaa 23017074  T
Q  208 aaggaatgt 216  Q
    |||||||||    
T  23017075 aaggaatgt 23017083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 23032551 - 23032735
Alignment:
Q  32 taaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatac 131  Q
    |||||| ||||| ||||||||||| | |  ||||||||| ||||||||||| | |||| ||||| ||||||||  ||||||| |||||||||||||||||    
T  23032551 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 23032650  T
Q  132 aacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 216  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  23032651 aacaacatcgcgagggccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttccggcaccaaagggaatgt 23032735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 23024087 - 23024291
Alignment:
Q  10 gatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactagg 109  Q
    |||||||||||||||| |||||||| || ||||| ||||| | ||  |||   |||||||  ||||||||||||||||||||||||||||||||| ||||    
T  23024087 gatgataaacagaaggtaacaataatagatcatcttttctacacactgtgataccaaatttctcagtcatgtccaattcttcacttttgattccattagg 23024186  T
Q  110 aagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaa 209  Q
    ||||||||| |||||||| ||||||||| | |||||||| |  |||| | ||| |||||||||| |||||||||| |||||||||| ||| | |||||||    
T  23024187 aagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttcgcaaaccaaatatgctccctggacatattcttcgtcccgcaccaaaa 23024286  T
Q  210 ggaat 214  Q
    |||||    
T  23024287 ggaat 23024291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 23139859 - 23140067
Alignment:
Q  8 aggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccacta 107  Q
    ||||||| ||||| |||| ||||||||||| ||||| ||||||||||  | | |||||||||| || ||||| ||||||||||||||| | ||||||||     
T  23139859 aggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactc 23139958  T
Q  108 ggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaa 207  Q
    ||||||||||| ||||||| | |||||||  | ||||||| ||  |||| |||||||||||||||| |||| |||||||||||||||| ||| | |||||    
T  23139959 ggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaa 23140058  T
Q  208 aaggaatgt 216  Q
    |||||||||    
T  23140059 aaggaatgt 23140067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 6941 - 6733
Alignment:
Q  8 aggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccacta 107  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||| ||  |||||||||| || |||||||||||||||||||||||||||||||      
T  6941 aggatgataaacagagggaaacaatgaaagatcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttttgattccacat 6842  T
Q  108 ggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaa 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||||||||| | || |||||||| ||||||||||| | |||||    
T  6841 ggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaa 6742  T
Q  208 aaggaatgt 216  Q
    |||||||||    
T  6741 aaggaatgt 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 21779663 - 21779834
Alignment:
Q  45 tttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaa 144  Q
    |||||| |||| ||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  21779663 tttcttttcattgtgactccgaattcctcagtcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaatgatacaacaacatcgcaa 21779762  T
Q  145 gggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 216  Q
    ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  21779763 gggtcgtctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaatggaatgt 21779834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 216
Target Start/End: Original strand, 62019 - 62174
Alignment:
Q  61 ctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatt 160  Q
    |||||||||  |||||||||||||| ||||||| ||| |||||| | ||||||||||| ||||| |||||||||||||| ||||| ||||  |||| | |    
T  62019 ctccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatcaaagtgatacaacaacattgcaagtgccagctcaagact 62118  T
Q  161 tctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 216  Q
      ||||||||||| | || ||||||||||||||| |||| | ||||||||||||||    
T  62119 catcaaaccaaatttactgcctgggcatattctttttccagcaccaaaaggaatgt 62174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 12609749 - 12609926
Alignment:
Q  39 tcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaaca 138  Q
    ||||| |||||| | | ||| ||||||||||  ||||||||||| || || |||| ||| |||||| | ||||||||||| ||||| |||||||||| ||    
T  12609749 tcatcttttcttttgacggtcgctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaacatca 12609848  T
Q  139 tcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 216  Q
      ||||| ||||  |||| |||| |||||||||||||||| ||||| |||||||||||||| | |||||| |||||||    
T  12609849 atgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgt 12609926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 12636869 - 12637022
Alignment:
Q  63 ccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttc 162  Q
    |||||||  |||||||||||||| || |||| ||| |||||| | |||||| |||| ||||| ||||| |||||||  ||||| ||||  |||| ||||     
T  12636869 ccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaaagtgatataacaacaatgcaagtgccaactcaacattta 12636968  T
Q  163 tcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 216  Q
    |||||||||||||| | |||||||||||||||||||| | ||||||||||||||    
T  12636969 tcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgt 12637022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 15886118 - 15885941
Alignment:
Q  39 tcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaaca 138  Q
    ||||| |||||| | | ||| ||||||||||  || |||||||| || || |||| |||  |||||   |||||| |||| ||||| |||||||||||||    
T  15886118 tcatcttttcttttgacggtcgctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcgggaagcctccaatcaaagtgatacaacaaca 15886019  T
Q  139 tcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 216  Q
      ||||| ||||  |||| ||||  ||||||||||||  | || ||||||||||||||||| ||||||||||||||||    
T  15886018 atgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaaggaatgt 15885941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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