View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_5 (Length: 601)
Name: NF9161_low_5
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 14 - 585
Target Start/End: Complemental strand, 32947673 - 32947102
Alignment:
| Q |
14 |
aataactctattgagaaaatctctaaattgcgttaatactattctttcttgttcagcataaacctctgtcactccttgtccgtcaggaaattgcgaagat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32947673 |
aataactctattgagaaaatctctaaattgcgttaatactattctttcttgttcagcataaacctctgtcactccttgtccgtcaggaaattgcgaagat |
32947574 |
T |
|
| Q |
114 |
gtattgcaggcatgggtcgtttgtccgatgggagaggcagcggtcatgaacattgaatcttgctcgtcacacatcaaggctaaagtcccaggagacatcg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32947573 |
gtattgcaggcatgggtcgtttgtccgatgggagaggcagctgtcatgaacattgaatcttgctcgtcacacatcaaggctaaagtcccaggagacatcg |
32947474 |
T |
|
| Q |
214 |
gtctttttgggacatcagcgccatctgaacatgaattaccagggctgattttatctgtttgatttgcacttgaacaatcatcatccatagccttctcaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32947473 |
gtctttttgggacatcagcgccatctgaacatgaattaccagggctgattttatctgtttgatttgcacttgaacaatcatcatccatagccttctcaac |
32947374 |
T |
|
| Q |
314 |
atcaacttctttttgactcagtaattgctcttgagttgatgaagcaagggaagtttctgtctgatcttctgttcgcttttccactgnnnnnnnctggtct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
32947373 |
atcaacttctttttgactcagtaattgctcttgagttgatgaagcaagggaagtttctgtctgatcttctgtacgcttttccactgtttttttctggtct |
32947274 |
T |
|
| Q |
414 |
gatcaaattaaaacaaaaattgatgagaaaaggaaacacaatcaatggttgtgaaaaaggtatccgatccttagtgtgattctcagctctgtggttttca |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32947273 |
gatcaaattaaaacaaaaattgatgagaaaaggaaacacaatcaatggttgtgaaaaaggtatccgatccttaatgtgattctcagctctgtggttttca |
32947174 |
T |
|
| Q |
514 |
ttttgattatgcactagtctagagcagtgtaattatgataaagtttcatatggtacagttgttattggtcca |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32947173 |
ttttgattatgcactagtctagagcagtgtaattatgataaagtttcatatggtacagttgttattggtcca |
32947102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 43476711 - 43476338
Alignment:
| Q |
15 |
ataactctattgagaaaatctctaaattgcgttaatactattctttcttgttcagcataaacctctgtcactccttgtccgtcaggaaattgcgaagatg |
114 |
Q |
| |
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||||| ||||| ||||||||||| |||| ||| ||||| || |||||||| || ||||| | |||| || |||||||||| | ||| ||||| ||||||| |
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| T |
43476711 |
ataaccctattaagaaaatctctgaatttcgtcaatacgatcctttcttgctctgcatagatctctttcgctccttgtccataaggcaattgtgaagatg |
43476612 |
T |
|
| Q |
115 |
tattgcaggcatgggtcgtttgtccgatgggagaggcagcggtcatgaacattgaatcttgctcgtcacacatcaaggctaaagtcccaggagacatcgg |
214 |
Q |
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| ||||| ||||| | | | | | | | |||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
43476611 |
tgttgcaagcatgagccatcgacacagtagagggggcagcagtcatgaacattgtatcttgctcgtcacacatcaatgctaaagttccaggagacattgg |
43476512 |
T |
|
| Q |
215 |
tct---ttttgggacatcagcgccatctgaacatgaattaccagggctgattttatctgtttgatttgcacttgaacaatcatcatccatagccttctca |
311 |
Q |
| |
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|| |||||| |||||||| |||||||||| ||||| |||| ||| ||||||| ||||| |||||||| |||||||||||| ||| ||| |||||| |
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| T |
43476511 |
cctcccttttggaacatcagcaccatctgaactggaattttcaggactggttttatcagtttggtttgcactcgaacaatcatcagccacagctttctca |
43476412 |
T |
|
| Q |
312 |
acatcaacttctttttgactcagtaattgctcttgagttgatgaagcaagggaagtttctgtctgatcttctgt |
385 |
Q |
| |
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|||||| |||| |||||| | |||||||||||||| |||| |||||||| ||||||||||||||||| ||||| |
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| T |
43476411 |
acatcagcttccttttgatttggtaattgctcttgatttgaggaagcaagagaagtttctgtctgatcatctgt |
43476338 |
T |
|
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