View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_6 (Length: 535)
Name: NF9161_low_6
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 10259603 - 10259086
Alignment:
| Q |
18 |
caaagcctcagcaacgcccattgccaccttatatctctcagtccaaccaaactcgagcgaatttttcttactacctattttggcattgagcaaaatgaag |
117 |
Q |
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| T |
10259603 |
caaagcctcagcaacgcccattgccaccttatatctctcagtccaacctaactcgagcgaatttttcttactacctattttggcattgagcaaaatgaag |
10259504 |
T |
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| Q |
118 |
taaataatcctgaaagcaatttcatattgattgataaaagatagtaaattgcgtacatatttgtcctatttatatagagctcaatcgaaccaactaatca |
217 |
Q |
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| T |
10259503 |
taaataatcctgaaagcaatttcatattgattgataaaagatagtaaattgcgtacatatttgtcctatttatatagagctcaatcgaaccaactaatga |
10259404 |
T |
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| Q |
218 |
aataactaactcctaacaaaataactatcttaacaaaagctaaggtgaatattgtaatggtgttgaacatattgcgtaccctgaaggttttgttcaaggc |
317 |
Q |
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| T |
10259403 |
aataactaactcctaacaaaataactatcttaacaaaagctaaggtgaatattgtaacggtgttgaacatattgcgtaccctgaaggttttgttcaaggc |
10259304 |
T |
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| Q |
318 |
tccctcttgataagaaatcatagaccaaaagaagattgtcatcttcaaagcagaatccaatgagagaaatgannnnnnngtgatgcaaagcggtgataat |
417 |
Q |
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| T |
10259303 |
tccctcttgataagaaatcatagaccaaaagaagattgtcatcttcaaagcagaatccaatgagagaaatgatgtttttgtgatgcaaagcggtgataat |
10259204 |
T |
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| Q |
418 |
ttctatctctaaaacaaactccttcaaaacatcatcagaaggctttaagatcttaacagcaagttcctttccatcagggaggcagcctttataaacctga |
517 |
Q |
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| T |
10259203 |
ttctatctctaaaacaaactccttcaaaacatcatcagaaggctttaagatcttaacagcaagttcctttccatcagggaggcaacctttataaacccga |
10259104 |
T |
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| Q |
518 |
ctacttcctcctttacca |
535 |
Q |
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| T |
10259103 |
ctacttcctcctttacca |
10259086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 310 - 531
Target Start/End: Complemental strand, 40377952 - 40377731
Alignment:
| Q |
310 |
ttcaaggctccctcttgataagaaatcatagaccaaaagaagattgtcatcttcaaagcagaatccaatgagagaaatgannnnnnngtgatgcaaagcg |
409 |
Q |
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||||||||| |||||||||||||||||||||||||| || |||||| ||| || |||||||| || ||||| ||||| | ||||||||| | | |
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| T |
40377952 |
ttcaaggcttcctcttgataagaaatcatagaccaagagtagattgccattctcgaagcagaacccgatgagggaaataatgtttttgtgatgcaatgtg |
40377853 |
T |
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| Q |
410 |
gtgataatttctatctctaaaacaaactccttcaaaacatcatcagaaggctttaagatcttaacagcaagttcctttccatcagggaggcagcctttat |
509 |
Q |
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| T |
40377852 |
gtgatgatttctatttccaaaagaaactctttcaaaacatcatacgaaggctttaggatcttgacagcaagttctttgccatcacgaaggcagcctcggt |
40377753 |
T |
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| Q |
510 |
aaacctgactacttcctccttt |
531 |
Q |
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| T |
40377752 |
aaaccttactacttcctccttt |
40377731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 40378133 - 40378079
Alignment:
| Q |
18 |
caaagcctcagcaacgcccattgccaccttatatctctcagtccaaccaaactcg |
72 |
Q |
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| T |
40378133 |
caaagcttcagcaacgcctgttgcaaccttatatctctgtgtccaaccaaactcg |
40378079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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