View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9161_low_9 (Length: 487)
Name: NF9161_low_9
Description: NF9161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9161_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 468
Target Start/End: Complemental strand, 6623762 - 6623309
Alignment:
| Q |
15 |
cagagatgctgtatgtatacatgtccttcatatgttaaataggtgtgaattttgatctaattatgcaggctgcagctatgtttaaggtaatgaaggatac |
114 |
Q |
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| T |
6623762 |
cagaggtgttgtatgtatacatgtccttcatatgttaaataggtgtgaattttgatctaattatgcaggctgcagctatgtttaaggtaatgaaggatac |
6623663 |
T |
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| Q |
115 |
ccctcctatacctgaaacattgtcaccagaagctaaagatttcttgaggctttgctttataagaaatccagcagagcggccaactgcttcaatgttatta |
214 |
Q |
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| T |
6623662 |
ccctcctatacctgaaacattgtcaacagaaggtaaagatttcttgaggctttgctttgtaagaaatccagcagagcggccaactgcttcaatgttatta |
6623563 |
T |
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| Q |
215 |
gagcatcggtttctgaaaaacgtacaacattcagatccttcaccttcctcccatctatataatggaacaacctcgatggtaataatataagatctgtggc |
314 |
Q |
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| T |
6623562 |
gagcatcggtttctgaaaaacgtacaacattcagatccttcaccttcctcccatctatataatggaacaaccttgatggtaataatataagatctgtggc |
6623463 |
T |
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| Q |
315 |
tcttttctatttgccaaaccaggcatttgatattaacttttcttatgctggcaggataaaccccatagccccagagggttatcagaaaacaaacctgatc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623462 |
tcttttctatttgccaaaccaggcatttgatattaacttttcttatgctggcaggataaaccccatagccccagagggttatcagaaaacaaacctgatc |
6623363 |
T |
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| Q |
415 |
agttttccattgtcagtgcacagattggaaaagggaaatctgccaccgagaggt |
468 |
Q |
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| T |
6623362 |
agttttccattgtcagtgcacagattggaaaagggaaatctgccaccgagaggt |
6623309 |
T |
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