View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_high_11 (Length: 248)
Name: NF9162_high_11
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 49654432 - 49654639
Alignment:
| Q |
18 |
agaacaggagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctac |
117 |
Q |
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| T |
49654432 |
agaacaagagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctac |
49654531 |
T |
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| Q |
118 |
tggtgcacctgcagacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtat |
217 |
Q |
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| T |
49654532 |
cggtgcacctgcacacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtat |
49654631 |
T |
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| Q |
218 |
ccagaaac |
225 |
Q |
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|||||||| |
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| T |
49654632 |
ccagaaac |
49654639 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
173 |
caagtgaatctcagccctacacgtcagcaatc |
204 |
Q |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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