View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_high_4 (Length: 404)
Name: NF9162_high_4
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 45529150 - 45529537
Alignment:
| Q |
17 |
acaatgttccttgaatctcttgatgttctaaaattatattgctttggctcagttttttggctataaagcatattacattattatagccaaaggtttgggc |
116 |
Q |
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| T |
45529150 |
acaatgttccttgaatctcttgatgttctaaaattatattgctttggctcagttttttggctataaagcatattacattattatagccaaaggtttgggc |
45529249 |
T |
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| Q |
117 |
ttaaagtttcgccttttgttgtaagtctctctaaacctgtaatcttttcttaaactgctagttgttttgtactcttttctgtttgttaactagaaaaccc |
216 |
Q |
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| T |
45529250 |
ttaaagtttcgccttttgttgtaagtctctctaaacctgtaatcttttcttaaactgctagttgttttgtactcttttctgtttgttaactagaaaaccc |
45529349 |
T |
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| Q |
217 |
atatttaggatttgtgaccacaaatatttcattccttcctataatccccgtttgtaaagtaccagtgacgaataacccagaatatactgtctttagctat |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45529350 |
atatttaggatctgtgaccacaaatatttcattccttcctataatccccgtttgtaaagtaccagtgacgaataacccagaatatactgtctttagctat |
45529449 |
T |
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| Q |
317 |
tgtgttattgtgtactctatctccaaatatatagcattggtagaccaactgatcttgtaacataacatttatatcgccttgttgaaac |
404 |
Q |
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| T |
45529450 |
tgtgttattgtgtactctatctccaaatatatagcattggtagaccaactgatcttgtaacataacatttatatcgccttgttgaaac |
45529537 |
T |
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