View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9162_low_1 (Length: 1001)
Name: NF9162_low_1
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 838; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 15 - 950
Target Start/End: Original strand, 27355618 - 27356555
Alignment:
| Q |
15 |
cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27355618 |
cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
27355717 |
T |
|
| Q |
115 |
aagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
27355718 |
aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagaaaccatggttagttagaagttttgatttg |
27355817 |
T |
|
| Q |
215 |
tgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaacctatcccaacat |
314 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27355818 |
tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttccagaatcctttttccacaaaattaagcaacttatcccaacat |
27355917 |
T |
|
| Q |
315 |
aaattgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttccttccttgaaataaggcactaaacatggagt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27355918 |
aaattgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttccttccttgaaataaggcactaaacatggagt |
27356017 |
T |
|
| Q |
415 |
agagaatttatgagtaagtaagtaataggcaaagacgacacattctaactgtattgcaaaaagaatgactatttattatgaaaatgaaatgttgaagaaa |
514 |
Q |
| |
|
| |||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356018 |
aaagaatttatg----agtcagtaataggcaaaaacgacacattctaactgtagtgcaaaaagaatgactatttattatgaaaatgaaatgttgaagaaa |
27356113 |
T |
|
| Q |
515 |
aataatcatgttaggaacatgcatctttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgtttct |
614 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356114 |
aataatcatgttaggaacatgcaactttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgtttct |
27356213 |
T |
|
| Q |
615 |
atagaattacacacactttgccaagccagaagcaagtccatgattacacatttaattgattcataaaaagtaaaaagctaggaagaaaacatgcaccgcc |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356214 |
atagaattacacacactttgccaagccagaagcaagtccatgattacacatttaattgattcataaaaagtaaaaagctaggaagaaaacatgcaccgcc |
27356313 |
T |
|
| Q |
715 |
t------tagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagagcaattgccaaagataagctaccatcatttgt |
808 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356314 |
ttagaaatagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagagcaattgccaaagataagctaccatcatttgt |
27356413 |
T |
|
| Q |
809 |
tgagcttggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttccccaaccaaagtcagcttcatggattggtaac |
908 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27356414 |
tgagctcggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttccccaaccaaagtcagcttcatagattggtaac |
27356513 |
T |
|
| Q |
909 |
cttgcccagctagtgataccaagatttggacacttaaaagta |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356514 |
cttgcccagctagtgataccaagatttggacacttaaaagta |
27356555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 15 - 950
Target Start/End: Complemental strand, 45411542 - 45410608
Alignment:
| Q |
15 |
cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411542 |
cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
45411443 |
T |
|
| Q |
115 |
aagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttg |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45411442 |
aagttagttggataaggatgagatagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttagttagaagttttgatttg |
45411343 |
T |
|
| Q |
215 |
tgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaacctatcccaacat |
314 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45411342 |
tgtatataaattatgtattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaacttatcccaacat |
45411243 |
T |
|
| Q |
315 |
aaattgcctattaatcttgtaaattgatgattatttatcatgtgtaaattgcctattagcgtttagttccttccttgaaataaggcactaaacatggagt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411242 |
aaattgcctattaatcttgtaaattgatgattatttatca-------------tattcgcgtttagttccttccttgaaataaggcactaaacatggagt |
45411156 |
T |
|
| Q |
415 |
agagaatttatgag-taagt-aagtaataggcaaagacgacacattctaactgtattgcaaaaagaatgactatttattatgaaaatgaaatgttgaaga |
512 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411155 |
agagaatttatgagttaagtaaagtaataggcaaagacgacacattctaactgtattgcaaaaagaatgactatttattatgaaaatgaaatgttgaaga |
45411056 |
T |
|
| Q |
513 |
aaaataatcatgttaggaacatgcatctttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgttt |
612 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45411055 |
aaaataatcatgttaggaacatgcaactttggcgccaaaacaatgaaagcaatcacaaatcttgtccaaatgtgatgtcaaattaataacacacttgttt |
45410956 |
T |
|
| Q |
613 |
ctatagaattacacacactttgccaagccagaagcaagtccatgattacacattta----attgattcataaaaagtaaaaagctaggaagaaaacatgc |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45410955 |
ctatagaattacacacactttgccaagccagaagcaagtccatgattacacatttaattgattgattcataaaaagtaaaaagctaggaagaaaacatgc |
45410856 |
T |
|
| Q |
709 |
accgcct------tagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagagcaattgccaaagataagctaccatc |
802 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45410855 |
accgccttagaaatagaatccctcaaatgtcataaaacaattcctgaaacagtttcatctgatctggaggcagaccaattgccaaagataagctaccatc |
45410756 |
T |
|
| Q |
803 |
atttgttgagcttggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttccccaaccaaagtcagcttcatggatt |
902 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45410755 |
atttgttgagctcggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtcttccccaaccaaagtcagcttcatagatt |
45410656 |
T |
|
| Q |
903 |
ggtaaccttgcccagctagtgataccaagatttggacacttaaaagta |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45410655 |
ggtaaccttgcccagctagtgataccaagatttggacacttaaaagta |
45410608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 945 - 986
Target Start/End: Original strand, 27356738 - 27356779
Alignment:
| Q |
945 |
aaagtagccttgtggaagtgaaggttgaagccttgatcttcc |
986 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27356738 |
aaagtaaccttgtggaagtgaaggttgaagccttgatcttcc |
27356779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 945 - 986
Target Start/End: Complemental strand, 45410425 - 45410384
Alignment:
| Q |
945 |
aaagtagccttgtggaagtgaaggttgaagccttgatcttcc |
986 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45410425 |
aaagtaaccttgtggaagtgaaggttgaagccttgatcttcc |
45410384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 774 - 950
Target Start/End: Complemental strand, 1130757 - 1130581
Alignment:
| Q |
774 |
agagcaattgccaaagataagctaccatcatttgttgagcttggaatgatgaaagataacccctcatatgcaatcccaccaggtcccatgaatatgggtc |
873 |
Q |
| |
|
||||||||||||| |||||| || |||||||||| |||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||| || || | |
|
|
| T |
1130757 |
agagcaattgccacagataaacttccatcatttgctgagcttggaattatgaaagaaagcccttcataagcaatcccaccaggtcccatgaaaataggcc |
1130658 |
T |
|
| Q |
874 |
ttccccaaccaaagtcagcttcatggattggtaaccttgcccagctagtgataccaagatttggacacttaaaagta |
950 |
Q |
| |
|
||||||||||||| ||||| ||||| || || | ||| ||||| ||||| ||||||||||| |||||||| |||||| |
|
|
| T |
1130657 |
ttccccaaccaaaatcagcatcatgtatcggaagcctagcccaactagtaataccaagattcggacacttgaaagta |
1130581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 819
Target Start/End: Complemental strand, 1109912 - 1109867
Alignment:
| Q |
774 |
agagcaattgccaaagataagctaccatcatttgttgagcttggaa |
819 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
1109912 |
agagcaattgccactgataaactcccatcatttgttgagcttggaa |
1109867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 90 - 248
Target Start/End: Original strand, 7552123 - 7552281
Alignment:
| Q |
90 |
ttattattagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatc |
189 |
Q |
| |
|
||||||||| |||||| | |||||||||| || |||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||||||| | |
|
|
| T |
7552123 |
ttattattaaattgttattggctagaagttggtcggataaggatgagttagttagttaaaaattaactcaccatagaatttacttgcgagtcaagtaacc |
7552222 |
T |
|
| Q |
190 |
atggttaggtagaagttttgatttgtgtatataagttatgcattgcactgagaaaatgt |
248 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||| ||| |||| | |||||| |||| |
|
|
| T |
7552223 |
atagttagttagaagttttgatttgtgtatataagtgatgtattgtattgagaatatgt |
7552281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 8850027 - 8849968
Alignment:
| Q |
98 |
agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaact |
157 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
8850027 |
agttagttactagctaaaagttagttggataagattgagttagttagtttaagattaact |
8849968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 14806416 - 14806232
Alignment:
| Q |
37 |
taatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagttagttggataaggatgag |
136 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||||||||||||| | ||| |||||| | ||||||||| ||||||||||||||||||||||| || |
|
|
| T |
14806416 |
taatctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaa---gtttgttacaggctagaagttagttggataaggacgaa |
14806320 |
T |
|
| Q |
137 |
ttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttgtgtatataag |
224 |
Q |
| |
|
||||||| ||| |||||||||||| ||| || | ||||||| ||| || ||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
14806319 |
ttagttagttagagattaactcactatagatttaatttggtggacaaacaaccatagttagtcagaagttttaatttgtgtatataag |
14806232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 852 - 945
Target Start/End: Original strand, 31965192 - 31965285
Alignment:
| Q |
852 |
ccaggtcccatgaatatgggtcttccccaaccaaagtcagcttcatggattggtaaccttgcccagctagtgataccaagatttggacacttaa |
945 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| ||||| |||| |||||| ||| ||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
31965192 |
ccaggtcccatgaaaattggccttccccaaccaaaatcagcatcatagattggaaactttgcccaactaatgatcgcaagatttggacacttaa |
31965285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 10281049 - 10280970
Alignment:
| Q |
95 |
attagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttactt |
174 |
Q |
| |
|
|||||||||| |||| ||||||||||||| || ||||||||||||||| ||| |||||||||||| || ||||||||| |
|
|
| T |
10281049 |
attagtttgtgactatctagaagttagttagagaaggatgagttagttggttagagattaactcaccttagggtttactt |
10280970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 827
Target Start/End: Original strand, 31965117 - 31965170
Alignment:
| Q |
774 |
agagcaattgccaaagataagctaccatcatttgttgagcttggaatgatgaaa |
827 |
Q |
| |
|
|||| |||| ||| |||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
31965117 |
agagaaattaccacagataaactcccatcatttgttgagcttggaattatgaaa |
31965170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 55212258 - 55212377
Alignment:
| Q |
100 |
tttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggt |
199 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||| ||| |||||| | | |||||||||||||||| ||||||||| |||| ||| | |
|
|
| T |
55212258 |
tttgttactagatagaagttggtttgataaggatgagttag----ttagagattagcaaatcatatggtttacttggtagtcaagtaaccatgattaatt |
55212353 |
T |
|
| Q |
200 |
agaagtttt-gatttgtgtatata |
222 |
Q |
| |
|
| ||||||| |||||||||||||| |
|
|
| T |
55212354 |
ataagttttcgatttgtgtatata |
55212377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 31608605 - 31608527
Alignment:
| Q |
39 |
atctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagtta |
120 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
31608605 |
atctagtgtatagttgttttgatgtatatatattagattagcacaaatttg---ttattagtttgttcctagctagaagtta |
31608527 |
T |
|
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