View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9162_low_13 (Length: 399)

Name: NF9162_low_13
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9162_low_13
NF9162_low_13
[»] chr8 (7 HSPs)
chr8 (73-387)||(44638823-44639144)
chr8 (105-249)||(36994512-36994662)
chr8 (176-228)||(33196240-33196292)
chr8 (73-249)||(30935983-30936165)
chr8 (176-249)||(13005758-13005831)
chr8 (119-219)||(13468771-13468877)
chr8 (119-219)||(15682938-15683044)
[»] chr6 (4 HSPs)
chr6 (73-239)||(12411137-12411309)
chr6 (184-250)||(25084012-25084078)
chr6 (123-170)||(29986811-29986859)
chr6 (73-167)||(12836877-12836972)
[»] chr4 (3 HSPs)
chr4 (105-219)||(38844180-38844300)
chr4 (105-246)||(38766071-38766218)
chr4 (105-249)||(45994501-45994651)
[»] chr3 (6 HSPs)
chr3 (74-219)||(38331137-38331288)
chr3 (105-250)||(30995977-30996128)
chr3 (153-219)||(54877842-54877913)
chr3 (192-224)||(1386860-1386892)
chr3 (122-219)||(40294621-40294724)
chr3 (141-219)||(48211008-48211092)
[»] chr7 (4 HSPs)
chr7 (152-249)||(28537369-28537471)
chr7 (174-221)||(22315858-22315905)
chr7 (74-250)||(29059783-29059965)
chr7 (74-166)||(11486725-11486818)
[»] chr2 (11 HSPs)
chr2 (124-219)||(17672640-17672741)
chr2 (152-249)||(12133290-12133392)
chr2 (123-219)||(17627568-17627670)
chr2 (73-174)||(17981557-17981658)
chr2 (119-219)||(31579255-31579361)
chr2 (117-219)||(24359573-24359681)
chr2 (174-250)||(28365927-28366003)
chr2 (117-201)||(24412951-24413039)
chr2 (175-247)||(3772631-3772703)
chr2 (123-174)||(17658521-17658573)
chr2 (105-219)||(18105374-18105494)
[»] chr5 (3 HSPs)
chr5 (74-251)||(10591904-10592087)
chr5 (105-239)||(22188010-22188148)
chr5 (95-219)||(32313108-32313237)
[»] chr1 (7 HSPs)
chr1 (174-249)||(6607781-6607856)
chr1 (181-248)||(21774584-21774650)
chr1 (144-246)||(21089298-21089401)
chr1 (134-246)||(35692467-35692585)
chr1 (74-167)||(36806677-36806771)
chr1 (123-170)||(33059756-33059804)
chr1 (119-166)||(36522262-36522310)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 73 - 387
Target Start/End: Complemental strand, 44639144 - 44638823
Alignment:
Q  73 ataaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44639144 ataaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagtattgtggggctcaaatgtgcggcaaactctccctaagagttttaacgttgt 44639045  T
Q  172 tgc-----caaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggttctagacaactcgttta 266  Q
    |||     |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44639044 tgcatgctcaaggttggattcaaattcaggaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttggattctagacaactcgttta 44638945  T
Q  267 aaacaacatttatgagtaatttggtaaaaatagata-aaaatatctagaagtaaactttcagaggaattagaacccatcaaaagtagccactgttacccc 365  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44638944 aaacaacatttatgagtaatttggtaaaaatagataaaaaatatctagaagtaaactttcagaggaattagaacccatcaaaagtagccactgttacccc 44638845  T
Q  366 caccaatacttcccaacaccaa 387  Q
    ||||||||||||||||||||||    
T  44638844 caccaatacttcccaacaccaa 44638823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 249
Target Start/End: Original strand, 36994512 - 36994662
Alignment:
Q  105 agactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcct-aagagttttaacgttgttgc-----caaggttggattcaaactcaagac 198  Q
    ||||||||| | | ||| ||||||| | |||||| || |||||||||||| ||||||||||||| || |||     ||||| ||||||| ||| || |||    
T  36994512 agactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggac 36994611  T
Q  199 cttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggt 249  Q
    |||| ||||  |||||||||||||||| |||| | ||||||| ||||||||    
T  36994612 cttggttaaactagaagagacatgtgccatcttatctaagcgctcttgggt 36994662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 33196240 - 33196292
Alignment:
Q  176 aaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaat 228  Q
    ||||||||||||||||||| ||| ||||||||||||||||| || ||||||||    
T  33196240 aaggttggattcaaactcaggacattgattaagttagaagaaacctgtgcaat 33196292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 249
Target Start/End: Complemental strand, 30936165 - 30935983
Alignment:
Q  73 ataaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgt 171  Q
    |||||||||||| |||||||  |||| ||   ||||||||| | | | |||||| || | |||||| ||||||  |||||| |||||||||||||||||     
T  30936165 ataaaccgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgc 30936066  T
Q  172 tgcc-----aaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggt 249  Q
    |||      |||| ||||||| |||||| ||||||| ||||||||||||||||  || | |||||| ||||| | ||||||||    
T  30936065 tgcatgcttaaggctggattcgaactcaggaccttggttaagttagaagagacccgttccatctcatctaagtgctcttgggt 30935983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 13005758 - 13005831
Alignment:
Q  176 aaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggt 249  Q
    |||| |||||| |||| ||||||||||  |||| |||||||||||||||  |||||| ||||||| ||||||||    
T  13005758 aaggctggatttaaacccaagaccttggataagctagaagagacatgtgacatctcagctaagcgctcttgggt 13005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 13468771 - 13468877
Alignment:
Q  119 agcattgtggggctcaaatgtgcggcaaactctc-ctaagagttttaacgttg-----ttgccaaggttggattcaaactcaagaccttgattaagttag 212  Q
    ||||||||||| |||||||| |||||| |||||| ||||||||||||||| ||     |  |||||| ||||||| ||| || ||||||| ||||| |||    
T  13468771 agcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggattcgaacccaggaccttggttaagctag 13468870  T
Q  213 aagagac 219  Q
    |||||||    
T  13468871 aagagac 13468877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 15683044 - 15682938
Alignment:
Q  119 agcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttgc-----caaggttggattcaaactcaagaccttgattaagttag 212  Q
    ||||||||||| |  ||||| ||||||  |||||| |||||||||||||| || |||     ||||| ||||||| |||||| ||||||||||||| |||    
T  15683044 agcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaagctag 15682945  T
Q  213 aagagac 219  Q
    |||||||    
T  15682944 aagagac 15682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 12411309 - 12411137
Alignment:
Q  73 ataaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactc-tcctaagagttttaacgttgt 171  Q
    ||||||||||||||  ||||  |||| |||  ||||||||| | ||||||||||||| || ||||| |||||| |||| ||||||||||||||||| ||     
T  12411309 ataaaccgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgc 12411210  T
Q  172 tg-----ccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagc 239  Q
    ||     |||||| ||||||| |||||| ||||||| |||||||||||||||| ||| | |||||| ||||||    
T  12411209 tgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaagc 12411137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 25084078 - 25084012
Alignment:
Q  184 attcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggtt 250  Q
    |||| |||||||||| ||||||||| |||||||||| ||||  |||||| ||||| |||||||||||    
T  25084078 attcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaagtgttcttgggtt 25084012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 29986859 - 29986811
Alignment:
Q  123 ttgtggggctcaaatgtgcggcaaactctcct-aagagttttaacgttg 170  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  29986859 ttgtgggactcaaatgagcggcaaactctcctaaagagttttaacgttg 29986811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 12836877 - 12836972
Alignment:
Q  73 ataaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactct-cctaagagttttaacg 167  Q
    |||||||||||||| |||||  |||| ||   ||||||||| | ||||||||||||| | |||||| ||||| | |||| ||||||||||||||||    
T  12836877 ataaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacg 12836972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 38844180 - 38844300
Alignment:
Q  105 agactaatctcccaagcattgtggggctcaaatgtgcggcaaactc-tcctaagagttttaacgttgttg-----ccaaggttggattcaaactcaagac 198  Q
    ||||||||||| | |||||||||||| ||||||| |||||| |||| ||||||||||||||||| |||||     |||| | ||||||| |||||| |||    
T  38844180 agactaatctctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgac 38844279  T
Q  199 cttgattaagttagaagagac 219  Q
    |||| ||||| ||||||||||    
T  38844280 cttggttaagctagaagagac 38844300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 38766218 - 38766071
Alignment:
Q  105 agactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttgc-----caaggttggattcaaactcaagac 198  Q
    ||||||||| | | ||||||||| | | |||||| |||||| ||||||| |||||||||||||| || |||     ||||| ||||||||||| || |||    
T  38766218 agactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccaggac 38766119  T
Q  199 cttgattaagttagaagagacatgtgcaatctcacctaagcgttcttg 246  Q
    |||| ||||| ||||||||||  || | |||||| ||||||| |||||    
T  38766118 cttggttaagctagaagagactcgttccatctcatctaagcgctcttg 38766071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 45994651 - 45994501
Alignment:
Q  105 agactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttg-----ccaaggttggattcaaactcaagac 198  Q
    ||||||||||| | ||||||||| | | |||||| ||| ||  |||||| ||||||||||||||||||||     |||||| ||||||| ||  || |||    
T  45994651 agactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatccaggac 45994552  T
Q  199 cttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggt 249  Q
    |||| ||||| |||||||||| ||| | |||||| |||| || ||||||||    
T  45994551 cttggttaagctagaagagacctgttccatctcatctaaacgctcttgggt 45994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 38331288 - 38331137
Alignment:
Q  74 taaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactctc-ctaagagttttaacgttgtt 172  Q
    |||| |||||||| ||||| ||||| ||   ||||||||| | ||| ||||||||| | |||||| ||||||| ||||| ||||||||||||||| || |    
T  38331288 taaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgct 38331189  T
Q  173 gc-----caaggttggattcaaactcaagaccttgattaagttagaagagac 219  Q
    ||     ||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  38331188 gcatgctcaaagttggattcaaactcaggacattggttaagttagaagagac 38331137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 30995977 - 30996128
Alignment:
Q  105 agactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttg-----ccaaggttggattcaaactcaagac 198  Q
    ||||||||| | | ||||||||||| | || ||| |||||| ||||||| |||||||||||||| |||||     ||||||| |||||| ||| || |||    
T  30995977 agactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaacccaggac 30996076  T
Q  199 cttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggtt 250  Q
    |||| ||||| ||||||||||  || | |||||| ||||||| |||||||||    
T  30996077 cttggttaagatagaagagacccgttccatctcatctaagcgctcttgggtt 30996128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 54877913 - 54877842
Alignment:
Q  153 ctaagagttttaacgttgttg-----ccaaggttggattcaaactcaagaccttgattaagttagaagagac 219  Q
    |||||||||||||||||||||     |||||| || |||||||||||| |||||| ||||||||||||||||    
T  54877913 ctaagagttttaacgttgttggatgcccaaggctgaattcaaactcaaaaccttggttaagttagaagagac 54877842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 1386892 - 1386860
Alignment:
Q  192 tcaagaccttgattaagttagaagagacatgtg 224  Q
    |||||||||||||||||||||||||||||||||    
T  1386892 tcaagaccttgattaagttagaagagacatgtg 1386860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 40294724 - 40294621
Alignment:
Q  122 attgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttgc-----caaggttggattcaaactcaagaccttgattaagttagaag 215  Q
    ||||||||  ||||||| ||||||| || ||| ||||||||||||| |||||||     ||||| ||||||| |||||| ||||||||||||| |||| |    
T  40294724 attgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggattcgaactcaggaccttgattaaggtagagg 40294625  T
Q  216 agac 219  Q
    ||||    
T  40294624 agac 40294621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 48211008 - 48211092
Alignment:
Q  141 cggcaaactctcc-taagagttttaacgttgttgc-----caaggttggattcaaactcaagaccttgattaagttagaagagac 219  Q
    |||||| |||||| ||||||||||||||||| |||     ||||| ||||||| |||  || |||||||||||||||||||||||    
T  48211008 cggcaagctctccataagagttttaacgttgctgcatgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagac 48211092  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 28537471 - 28537369
Alignment:
Q  152 cctaagagttttaacgttgttgc-----caaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttg 246  Q
    |||||||||||||||||||||||     ||||| ||||||| ||| ||| |||||||||||||||||||||||  || | |||||| ||||||| |||||    
T  28537471 cctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaagcgctcttg 28537372  T
Q  247 ggt 249  Q
    |||    
T  28537371 ggt 28537369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 22315858 - 22315905
Alignment:
Q  174 ccaaggttggattcaaactcaagaccttgattaagttagaagagacat 221  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  22315858 ccaaggttggattgaaactcatgaccttggttaagttagaagagacat 22315905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 29059965 - 29059783
Alignment:
Q  74 taaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactct-cctaagagttttaacgttgtt 172  Q
    ||||||||||||| |||||  |||| ||   ||||||||| | ||||||||||||| | |||||| ||||||  |||| |||||||||||||||  || |    
T  29059965 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 29059866  T
Q  173 g-----ccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggtt 250  Q
    |     |||||| ||||||| ||| || ||||||| ||||| ||||||||||  || | |||||| ||||| | |||||||||    
T  29059865 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggtt 29059783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 11486725 - 11486818
Alignment:
Q  74 taaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactc-tcctaagagttttaac 166  Q
    ||||||||||||| |||||  |||| |||| |||||||||||   ||||||||||  | |||||| ||||||| ||| || |||||||||||||    
T  11486725 taaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaac 11486818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 17672741 - 17672640
Alignment:
Q  124 tgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttgc-----caaggttggattcaaactcaagaccttgattaagttagaagag 217  Q
    |||||| |||||||| || ||||||||||| ||||| |||||||||||||||     ||||||||||||| |||||| ||||||| |||| || ||||||    
T  17672741 tgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgcatgcccaaggttggattcgaactcaggaccttggttaaatttgaagag 17672642  T
Q  218 ac 219  Q
    ||    
T  17672641 ac 17672640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 12133290 - 12133392
Alignment:
Q  152 cctaagagttttaacgttgttg-----ccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttg 246  Q
    ||||||||||||||||||| ||     |||||| ||||||| ||| || ||||||||||||| ||||||||||  || | |||||| ||||||| |||||    
T  12133290 cctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgttccatctcatctaagcgctcttg 12133389  T
Q  247 ggt 249  Q
    |||    
T  12133390 ggt 12133392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 17627670 - 17627568
Alignment:
Q  123 ttgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttgc-----caaggttggattcaaactcaagaccttgattaagttagaaga 216  Q
    ||||||| |||||||| || ||||||| ||| ||||| |||||||||||||||     ||||| ||||||| |||||| ||||||| |||| ||||||||    
T  17627670 ttgtgggactcaaatgggcagcaaactttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaattagaaga 17627571  T
Q  217 gac 219  Q
    |||    
T  17627570 gac 17627568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 17981658 - 17981557
Alignment:
Q  73 ataaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgt 171  Q
    |||||||||||||| |||||  |||| ||   ||||||||||| | ||||||||||| | ||||| |||||||| |||||| |||||||||||| |||||    
T  17981658 ataaaccgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgttgt 17981560  T
Q  172 tgc 174  Q
    |||    
T  17981559 tgc 17981557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 31579255 - 31579361
Alignment:
Q  119 agcattgtggggctcaaatgtgcggcaaactct-cctaagagttttaacgttgttg-----ccaaggttggattcaaactcaagaccttgattaagttag 212  Q
    ||||||||||| || ||||| |||||| ||||| ||||| |||||||||  |||||     |||||| ||||||| ||| |||||||||||||||| |||    
T  31579255 agcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatgcccaaggctggattcgaacccaagaccttgattaagctag 31579354  T
Q  213 aagagac 219  Q
    |||||||    
T  31579355 aagagac 31579361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 24359681 - 24359573
Alignment:
Q  117 caagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttgc-----caaggttggattcaaactcaagaccttgattaagtt 210  Q
    ||||| ||||||||||||||||  |  |||||||||| ||| |||||||| |||| |||     ||||| |||||||||||  | |||||||||||||||    
T  24359681 caagccttgtggggctcaaatggaccacaaactctccctaaaagttttaatgttgctgcattatcaaggctggattcaaacctaggaccttgattaagtt 24359582  T
Q  211 agaagagac 219  Q
    |||||||||    
T  24359581 agaagagac 24359573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 28366003 - 28365927
Alignment:
Q  174 ccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggtt 250  Q
    |||||| || |||| |||||| ||||||| ||||||||||||||||  || | |||||| ||||||| |||||||||    
T  28366003 ccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttgggtt 28365927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 24412951 - 24413039
Alignment:
Q  117 caagcattgtggggctcaaatgtgcggcaaactctcctaagagttttaacgttgttgc----caaggttggattcaaactcaagacctt 201  Q
    |||| |||||||| |||||||  | ||||| ||||||| ||||||||||||||| |||    ||||||| ||||| |||||||||||||    
T  24412951 caagtattgtgggactcaaataggtggcaagctctccttagagttttaacgttgctgcatgtcaaggttagattcgaactcaagacctt 24413039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 3772631 - 3772703
Alignment:
Q  175 caaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgg 247  Q
    |||| |||||||| |||| | ||||||| |||| ||||||||||| ||||  |||||| ||||||| ||||||    
T  3772631 caagattggattcgaacttaggaccttggttaaattagaagagacttgtgtcatctcatctaagcgctcttgg 3772703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 17658573 - 17658521
Alignment:
Q  123 ttgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttgc 174  Q
    ||||||| |||||||| || ||||||||||| ||||| |||||||||||||||    
T  17658573 ttgtgggactcaaatgggcagcaaactctccctaagaattttaacgttgttgc 17658521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 18105374 - 18105494
Alignment:
Q  105 agactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttgttg-----ccaaggttggattcaaactcaagac 198  Q
    ||||||||| | | || |||||| | |||||||| ||||||  |||||| ||||| ||||||||||||||     |||||| ||||||| ||| || |||    
T  18105374 agactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgcccaaggctggattcgaacccaggac 18105473  T
Q  199 cttgattaagttagaagagac 219  Q
    |||| ||||| ||||||||||    
T  18105474 cttggttaagctagaagagac 18105494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 251
Target Start/End: Complemental strand, 10592087 - 10591904
Alignment:
Q  74 taaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactct-cctaagagttttaacgttgtt 172  Q
    |||| |||||||| |||||  |||| || | ||||||||| | | ||||||||||| |||||||| |||||| ||||| |||||||||||||||  || |    
T  10592087 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgct 10591988  T
Q  173 g-----ccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggttc 251  Q
    |     |||||| ||||||| ||| || ||||||| ||||  ||||||||||  || | |||||| ||||| | ||||||||||    
T  10591987 gcatgcccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccatctcatctaagtgctcttgggttc 10591904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 22188010 - 22188148
Alignment:
Q  105 agactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcctaagagttttaacgttgttg-----ccaaggttggattcaaactcaagacc 199  Q
    ||||||||| | | || |||||||| | |||||  |||||| ||||||| ||||||||||||| |||||     |||||| ||||||||||| ||| |||    
T  22188010 agactaatccctctagtattgtgggacccaaataggcggcagactctcc-aagagttttaacgctgttgtatgcccaaggctggattcaaacccaatacc 22188108  T
Q  200 ttgattaagttagaagagacatgtgcaatctcacctaagc 239  Q
    ||| |||||||||||||||   || |||||||| ||||||    
T  22188109 ttggttaagttagaagagattcgttcaatctcatctaagc 22188148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 32313108 - 32313237
Alignment:
Q  95 gcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactctcct-aagagttttaacgttgt---tgcc-aaggttggattcaa 189  Q
    |||| |||| ||||||||| | | || ||||| || || ||||| || |||||||||||| ||||||||||||||| |   |||| || |||||||||||    
T  32313108 gcaactgtagagactaatccctcgagtattgtaggacttaaatgggcagcaaactctccttaagagttttaacgttctgcttgccgaaagttggattcaa 32313207  T
Q  190 actcaagaccttgattaagttagaagagac 219  Q
    |  ||||||||||||||||||| |||||||    
T  32313208 atccaagaccttgattaagttataagagac 32313237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 6607781 - 6607856
Alignment:
Q  174 ccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttgggt 249  Q
    |||| ||| ||||| ||||||||||| |||||||||||||||||||  |||  ||| || ||||||||||||||||    
T  6607781 ccaaagttagattcgaactcaagaccatgattaagttagaagagactcgtgtcatcccatctaagcgttcttgggt 6607856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 21774650 - 21774584
Alignment:
Q  181 tggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgttcttggg 248  Q
    ||||||| ||| ||| |||||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  21774650 tggattcgaacccaaaaccttgattaagctagaagagacatgtgc-atctcatctaagcgtttttggg 21774584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 21089298 - 21089401
Alignment:
Q  144 caaactctc-ctaagagttttaacgttgttgccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaatctcacctaagcgtt 242  Q
    ||||||||| |||||||||||||||||||   ||||| |||| |||||||||  | |||| ||||  |||||||||| ||||  |||||| |||| ||||    
T  21089298 caaactctcactaagagttttaacgttgtgttcaaggctggaatcaaactcagaatcttggttaaactagaagagacttgtgtcatctcatctaaacgtt 21089397  T
Q  243 cttg 246  Q
    ||||    
T  21089398 cttg 21089401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 35692585 - 35692467
Alignment:
Q  134 aaatgtgcggcaaactctcc-taagagttttaacgttgttg-----ccaaggttggattcaaactcaagaccttgattaagttagaagagacatgtgcaa 227  Q
    ||||| |||||||||||||| ||||||||||||||| ||||     |||| ||||||||| |||||||||| ||| ||||  ||||| ||||   ||| |    
T  35692585 aaatgagcggcaaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaaactagaaaagacccatgcca 35692486  T
Q  228 tctcacctaagcgttcttg 246  Q
    ||||| ||||||| |||||    
T  35692485 tctcatctaagcgctcttg 35692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 36806771 - 36806677
Alignment:
Q  74 taaaccgggtatcatccgcatgcaattgtaaagactaatctcccaagcattgtggggctcaaatgtgcggcaaactct-cctaagagttttaacg 167  Q
    ||||||||||||| ||||| ||||| || | ||||||||| | | ||||||||||  | |||||| |||||| || || ||||||||||||||||    
T  36806771 taaaccgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacg 36806677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 33059756 - 33059804
Alignment:
Q  123 ttgtggggctcaaatgtgcggcaaactctcc-taagagttttaacgttg 170  Q
    ||||||| | |||||| |||||||||||||| |||||||||||||||||    
T  33059756 ttgtgggacccaaatgggcggcaaactctccttaagagttttaacgttg 33059804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 36522262 - 36522310
Alignment:
Q  119 agcattgtggggctcaaatgtgcggcaaactct-cctaagagttttaac 166  Q
    ||||||||||| ||||||||  ||||||||||| |||||||||||||||    
T  36522262 agcattgtgggactcaaatggacggcaaactctccctaagagttttaac 36522310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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