View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9162_low_14 (Length: 395)

Name: NF9162_low_14
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9162_low_14
NF9162_low_14
[»] chr7 (14 HSPs)
chr7 (233-391)||(40521102-40521262)
chr7 (233-391)||(7298653-7298814)
chr7 (236-379)||(46568046-46568192)
chr7 (233-284)||(28948930-28948981)
chr7 (233-333)||(16979492-16979595)
chr7 (337-378)||(46567987-46568028)
chr7 (233-294)||(47478442-47478503)
chr7 (332-391)||(28948993-28949051)
chr7 (332-378)||(16979605-16979651)
chr7 (318-391)||(19805587-19805660)
chr7 (338-391)||(40521034-40521086)
chr7 (343-391)||(7298835-7298882)
chr7 (332-391)||(19804815-19804874)
chr7 (332-378)||(47478391-47478434)
[»] chr5 (30 HSPs)
chr5 (233-392)||(5146588-5146750)
chr5 (233-391)||(6518221-6518382)
chr5 (240-391)||(228735-228889)
chr5 (233-391)||(33377731-33377894)
chr5 (233-391)||(13823233-13823394)
chr5 (233-391)||(35454535-35454695)
chr5 (304-384)||(8489148-8489228)
chr5 (233-391)||(40881906-40882065)
chr5 (304-374)||(40881825-40881895)
chr5 (317-391)||(19898926-19899000)
chr5 (318-391)||(8323881-8323954)
chr5 (321-384)||(27319643-27319706)
chr5 (318-391)||(26534671-26534744)
chr5 (233-288)||(228894-228949)
chr5 (318-391)||(130421-130494)
chr5 (318-391)||(791610-791683)
chr5 (318-390)||(42630880-42630952)
chr5 (233-288)||(19897311-19897366)
chr5 (332-391)||(35454469-35454527)
chr5 (332-391)||(42630729-42630788)
chr5 (337-378)||(14388512-14388553)
chr5 (338-391)||(19897243-19897295)
chr5 (332-391)||(6518390-6518448)
chr5 (332-391)||(26534524-26534583)
chr5 (343-391)||(5146522-5146569)
chr5 (343-391)||(14069879-14069926)
chr5 (332-391)||(130272-130331)
chr5 (332-391)||(8323725-8323784)
chr5 (348-378)||(228987-229017)
chr5 (233-283)||(27319564-27319614)
[»] chr8 (13 HSPs)
chr8 (233-391)||(14193341-14193502)
chr8 (233-391)||(2814329-2814490)
chr8 (233-392)||(397092-397252)
chr8 (235-391)||(41539788-41539947)
chr8 (97-287)||(40586251-40586430)
chr8 (318-391)||(37994881-37994954)
chr8 (318-391)||(25101748-25101821)
chr8 (332-391)||(14193512-14193570)
chr8 (343-391)||(41539969-41540016)
chr8 (332-390)||(44036833-44036891)
chr8 (343-391)||(2814261-2814308)
chr8 (332-391)||(37994726-37994785)
chr8 (343-391)||(397025-397072)
[»] chr4 (13 HSPs)
chr4 (235-391)||(18936764-18936923)
chr4 (233-391)||(11147032-11147198)
chr4 (236-391)||(37177714-37177872)
chr4 (324-391)||(18381488-18381555)
chr4 (318-391)||(3102713-3102786)
chr4 (318-391)||(40534136-40534209)
chr4 (338-387)||(5121000-5121049)
chr4 (318-390)||(9231753-9231825)
chr4 (332-391)||(40533981-40534040)
chr4 (332-391)||(3102558-3102617)
chr4 (332-391)||(13690233-13690292)
chr4 (332-378)||(18936706-18936752)
chr4 (332-371)||(9231618-9231657)
[»] chr6 (8 HSPs)
chr6 (233-391)||(21389039-21389200)
chr6 (233-388)||(7789755-7789913)
chr6 (318-391)||(33022341-33022414)
chr6 (327-391)||(7789685-7789748)
chr6 (319-391)||(28472535-28472607)
chr6 (332-391)||(21389209-21389267)
chr6 (332-391)||(33022182-33022241)
chr6 (319-391)||(29859723-29859796)
[»] chr3 (14 HSPs)
chr3 (233-391)||(19580395-19580556)
chr3 (233-391)||(36635323-36635484)
chr3 (304-391)||(11651018-11651105)
chr3 (318-391)||(36274137-36274210)
chr3 (318-391)||(27073081-27073154)
chr3 (318-391)||(33214461-33214534)
chr3 (347-392)||(10599000-10599045)
chr3 (332-391)||(10598826-10598885)
chr3 (348-391)||(27072931-27072974)
chr3 (332-391)||(33214626-33214685)
chr3 (332-391)||(33219090-33219149)
chr3 (343-391)||(36635256-36635303)
chr3 (332-391)||(36274312-36274371)
chr3 (236-285)||(11651119-11651168)
[»] chr1 (28 HSPs)
chr1 (233-391)||(23346437-23346598)
chr1 (233-391)||(50892981-50893142)
chr1 (233-391)||(28217615-28217765)
chr1 (233-392)||(41833891-41834053)
chr1 (233-392)||(42180657-42180818)
chr1 (237-392)||(39669149-39669305)
chr1 (317-379)||(7062037-7062099)
chr1 (317-391)||(48871409-48871483)
chr1 (304-391)||(50905009-50905098)
chr1 (233-361)||(4156978-4157109)
chr1 (318-391)||(10227730-10227803)
chr1 (332-391)||(10227899-10227958)
chr1 (318-389)||(26552165-26552236)
chr1 (332-391)||(28217548-28217606)
chr1 (318-391)||(19059551-19059624)
chr1 (337-394)||(50905104-50905161)
chr1 (332-391)||(19059392-19059451)
chr1 (332-391)||(48871265-48871323)
chr1 (332-391)||(50893150-50893208)
chr1 (337-391)||(48752586-48752639)
chr1 (233-278)||(7062128-7062173)
chr1 (332-391)||(7062184-7062242)
chr1 (344-391)||(23346620-23346666)
chr1 (233-288)||(48871333-48871388)
chr1 (332-378)||(4156922-4156968)
chr1 (235-273)||(48752532-48752570)
chr1 (338-375)||(41834069-41834106)
chr1 (338-375)||(42180604-42180641)
[»] chr2 (20 HSPs)
chr2 (233-387)||(38086052-38086209)
chr2 (233-391)||(3671908-3672069)
chr2 (304-391)||(31470605-31470691)
chr2 (318-391)||(42028596-42028669)
chr2 (327-391)||(15332844-15332908)
chr2 (318-391)||(31860258-31860331)
chr2 (318-391)||(2059657-2059730)
chr2 (318-391)||(13280008-13280081)
chr2 (318-391)||(16115064-16115137)
chr2 (332-391)||(3671839-3671897)
chr2 (318-391)||(7317808-7317881)
chr2 (343-391)||(36059285-36059333)
chr2 (332-391)||(16115231-16115290)
chr2 (332-391)||(2059508-2059567)
chr2 (348-391)||(13279858-13279901)
chr2 (332-391)||(31470765-31470823)
chr2 (332-391)||(31860097-31860156)
chr2 (343-378)||(38085997-38086032)
chr2 (332-391)||(42028765-42028824)
chr2 (332-391)||(7317653-7317712)
[»] scaffold0214 (2 HSPs)
scaffold0214 (318-391)||(11644-11717)
scaffold0214 (332-391)||(11814-11873)
[»] scaffold0140 (2 HSPs)
scaffold0140 (343-391)||(15865-15913)
scaffold0140 (233-338)||(15936-16044)
[»] scaffold0135 (2 HSPs)
scaffold0135 (318-390)||(37619-37691)
scaffold0135 (332-371)||(37484-37523)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 40521102 - 40521262
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg--catgttttaaactatttccaaattattttaaaa 330  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||| || ||     ||| | ||||| ||||||| |||||||||||||    
T  40521102 accatgattggtagtggtgaatactaaccgcaaataatggttgagagagaggaggagcagttattttcatttattaaattatttcctaattattttaaaa 40521201  T
Q  331 taaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40521202 taaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 40521262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 7298814 - 7298653
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||| |||| |||| ||   |||   ||| | ||||| ||||| | ||||||||||||    
T  7298814 accatgattggtggtggtgaatactaagtgcaaataatggttgagaaagaggaggagcagttatttttcatttcttaaattattttctaattattttaaa 7298715  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  7298714 ataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgtt 7298653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 379
Target Start/End: Original strand, 46568046 - 46568192
Alignment:
Q  236 atgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaaata 332  Q
    |||||||||||| |||||||| ||| ||| ||||||||||||| |||| |||| ||   |||   ||| | ||||| ||||||| ||||||||| |||||    
T  46568046 atgattggtggtagtgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttattaaattatttcctaattatttttaaata 46568145  T
Q  333 aaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatat 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46568146 aaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatat 46568192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 28948981 - 28948930
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagaga 284  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  28948981 accatgattggtggtggtgaatactaaccgcaaataatggttcagagagaga 28948930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 16979595 - 16979492
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    ||||| |||||||||||||||||| ||| ||| ||||||||||||| |||| |||| ||   |||   ||| | ||||| ||||||||||||||||||||    
T  16979595 accataattggtggtggtgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaa 16979496  T
Q  330 ataa 333  Q
    ||||    
T  16979495 ataa 16979492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 46568028 - 46567987
Alignment:
Q  337 aatgatgtgtcatgttttaatttgttgtttgtaagaatgata 378  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata 46567987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 47478442 - 47478503
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaatt 294  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||| |||| |||| |||||    
T  47478442 accatgattgatggtggtgaatactaactgcaaataatggttgagagagaggaggagcaatt 47478503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 28948993 - 28949051
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  28948993 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgtt 28949051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 16979605 - 16979651
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgata 378  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||    
T  16979605 aaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata 16979651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 19805587 - 19805660
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||| ||| || |||||||||||||||||||| ||| |||| ||||||  ||| |||||||    
T  19805587 aattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgtt 19805660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 40521086 - 40521034
Alignment:
Q  338 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  40521086 atgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgtt 40521034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 7298835 - 7298882
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||||    
T  7298835 gtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 7298882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 19804874 - 19804815
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| |||||||| ||||| ||||||||||||||||| || |||  |||||||||||    
T  19804874 aaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgtt 19804815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 47478434 - 47478391
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgata 378  Q
    |||| |||||||||||||||   ||||||||||||||||||||||||    
T  47478434 aaaaaaatgatgtgtcatgt---aatttgttgtttgtaagaatgata 47478391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 233 - 392
Target Start/End: Original strand, 5146588 - 5146750
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||  |   |||   ||| | ||||| ||||||| ||||||||||||    
T  5146588 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggaggagttatttttcatttcttaaattatttcctaattattttaaa 5146687  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttt 392  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5146688 ataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttt 5146750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 6518382 - 6518221
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg---catgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| |||||      ||| | ||||| ||||||||||||||||||||    
T  6518382 accatgattggtggtggtgaatactaacggcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaa 6518283  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||  ||  |||||||||||||||||||||||||||||||| |||||||||||    
T  6518282 ataaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 6518221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 240 - 391
Target Start/End: Complemental strand, 228889 - 228735
Alignment:
Q  240 ttggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg---catgttttaaactatttccaaattattttaaaataaaac 336  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| || || |    ||| | ||||| ||||||| |||||||||||||||||||    
T  228889 ttggtggtggtgaataccaaccgcaaataatggttgagagagaggaggagcagttagttttcatttcttaaattatttcctaattattttaaaataaaac 228790  T
Q  337 aatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||| | ||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  228789 aataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgtt 228735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 33377731 - 33377894
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaag--gatca---attgggcatgttttaaactatttccaaattatttta 327  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||  || ||   |||    || | ||||| ||||||| ||||||||||    
T  33377731 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggagaggagcagttattttttatttcttaaattatttcctaattatttta 33377830  T
Q  328 aaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33377831 aaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 33377894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 13823233 - 13823394
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg---catgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||| |||| |||| |||||      ||| | ||||| ||||||| ||||||||||||    
T  13823233 accatgattggtggtggtgaatactaagtgcaaataatggttgagaaagaggaggagcaattatttttcatttcttaaattatttcctaattattttaaa 13823332  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| |||||||||||||||||||| ||||||| |||||||| ||| |||||||    
T  13823333 ataaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgtt 13823394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 35454535 - 35454695
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| | || ||   |||   ||| | ||||| ||||||||||||||||| ||    
T  35454535 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggacgagcagttatttttcatttcttaaattatttccaaattatttttaa 35454634  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  35454635 ctaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 35454695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 8489228 - 8489148
Alignment:
Q  304 ttaaactatttccaaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattag 384  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||    
T  8489228 ttaaattatttccaaattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttag 8489148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 40881906 - 40882065
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg---catgttttaaactatttccaaattattttaaa 329  Q
    ||||| ||||||||||| |||||| ||||| || ||||||||||||  ||||||||  | |||     ||| | ||||| ||||||||||||||||||||    
T  40881906 accattattggtggtggcgaatactaaccgtaagtaatggttgaga--gagaaggagtagttgttttccatttcttaaattatttccaaattattttaaa 40882003  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  40882004 ataaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgtt 40882065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 40881895 - 40881825
Alignment:
Q  304 ttaaactatttccaaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaat 374  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  40881895 ttaaattatttccaaattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaat 40881825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 19898926 - 19899000
Alignment:
Q  317 aaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  19898926 aaattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgtt 19899000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 8323881 - 8323954
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  8323881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgtt 8323954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 27319643 - 27319706
Alignment:
Q  321 tattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattag 384  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  27319643 tattttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttag 27319706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 26534671 - 26534744
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  26534671 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 26534744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 228949 - 228894
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaagga 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  228949 accatgattggtggtggtgaataccaaccgcaaataatggttgagagagaggagga 228894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 130421 - 130494
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || |||| |||||||||||||||||||||||| ||||||  |||||||||||    
T  130421 aattattttaaaagaaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 130494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 791683 - 791610
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||| ||  |||||||||||    
T  791683 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgtt 791610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 42630880 - 42630952
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgt 390  Q
    ||||||||||||| ||||||| || ||||||| ||||||||| ||||||||||| ||||||  ||||||||||    
T  42630880 aattattttaaaagaaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgt 42630952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 19897311 - 19897366
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaagga 288  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||    
T  19897311 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggagga 19897366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 35454527 - 35454469
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  35454527 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 35454469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 42630788 - 42630729
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgtt 42630729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 14388512 - 14388553
Alignment:
Q  337 aatgatgtgtcatgttttaatttgttgtttgtaagaatgata 378  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata 14388553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 19897295 - 19897243
Alignment:
Q  338 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 19897243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 6518390 - 6518448
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||  |||||||||||    
T  6518390 aaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgata-gttaggttcgtt 6518448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 26534583 - 26534524
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || |||||||||||||||||||||||||||||  |||||  |||||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgtt 26534524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 5146569 - 5146522
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  5146569 gtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgtt 5146522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 14069926 - 14069879
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||    
T  14069926 gtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgtt 14069879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 130331 - 130272
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || |||||||||||||||||||||||||||||  ||| |  |||||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgtt 130272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 8323784 - 8323725
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||||||||||||| ||||||||||  ||||||  |||||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgtt 8323725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 378
Target Start/End: Original strand, 228987 - 229017
Alignment:
Q  348 atgttttaatttgttgtttgtaagaatgata 378  Q
    |||||||||||||||||||||||||||||||    
T  228987 atgttttaatttgttgtttgtaagaatgata 229017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 27319564 - 27319614
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagag 283  Q
    |||||||||||||||||||||| | | | ||||||||||||||||| ||||    
T  27319564 accatgattggtggtggtgaatcctagctgcaaataatggttgagagagag 27319614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 14193502 - 14193341
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg---catgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| |||||      ||| | ||||| ||||||||||||||||||||    
T  14193502 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaa 14193403  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  14193402 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgtt 14193341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 2814329 - 2814490
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg---catgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |||||      ||| | ||||| ||||||| ||||||||| ||    
T  2814329 accatgattggtggtggtgaatactaaccgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattatttcctaattatttttaa 2814428  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2814429 aaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 2814490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 233 - 392
Target Start/End: Original strand, 397092 - 397252
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||| |||| ||   |||   ||| | ||||| ||||||| ||||||||||||    
T  397092 accatgattggtggtggtgaatactaaccgcaaataatggttgaga--gaggaggagcagttatttttcatttcttaaattatttcctaattattttaaa 397189  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttt 392  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  397190 ataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgttt 397252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 391
Target Start/End: Complemental strand, 41539947 - 41539788
Alignment:
Q  235 catgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaaat 331  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| ||   |||   ||| | ||||| |||||| |||||||||||||||    
T  41539947 catgattggtggtggtgaatactaactgcaaataatggttgagagagagaaggaacagttatttttcatttcttaaattatttcaaaattattttaaaat 41539848  T
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  41539847 aaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgtt 41539788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 97 - 287
Target Start/End: Complemental strand, 40586430 - 40586251
Alignment:
Q  97 gactcgcagatgatttggttatgataaaaagaatggttctttgttgaggagatcatgatatacaattgaaatattaaattttacatggaattcaaaagga 196  Q
    |||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||           ||||||||||    
T  40586430 gacttgcagatgatttggatatgatagaaagaatggttgtttgttgaggagagcatgacatataattgaaatattaaat-----------ttcaaaagga 40586342  T
Q  197 aaatcgtatatacacgagcaagctaaggaaagattcaccatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaagg 287  Q
    ||| ||| |||||| || ||||  ||||||||||||||||| |||||||||||||||| | ||| | |||||||| |||||| | ||||||    
T  40586341 aaaccgtgtatacaggaacaagtcaaggaaagattcaccataattggtggtggtgaatgctaacggtaaataatgattgagagatagaagg 40586251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 37994881 - 37994954
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||| ||||||||||| ||||||  |||||||||||    
T  37994881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgtt 37994954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 25101821 - 25101748
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| |||||||  ||||||||| ||||| ||||||||||| ||||||||||  |||||||||||    
T  25101821 aattattttaaaagaaaacaacaatgtgtcatattttattttgttgtttgcaagaatgataggttaggttcgtt 25101748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 14193512 - 14193570
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 14193570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 41539969 - 41540016
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  41539969 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 41540016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 44036891 - 44036833
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgt 390  Q
    ||||||| || ||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgt 44036833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 2814308 - 2814261
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||    
T  2814308 gtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgtt 2814261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 37994785 - 37994726
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || || |||||||||||||| ||||||||||| ||||||  |||||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgtt 37994726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 397072 - 397025
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| |||||||||||| ||||||||||||||||||  |||||||||||    
T  397072 gtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgtt 397025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 235 - 391
Target Start/End: Original strand, 18936764 - 18936923
Alignment:
Q  235 catgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaaat 331  Q
    |||||||||||||||||||||| ||| |||||||||||| |||| |||| |||| ||   |||   ||| | ||||| ||||||||||||||||||||||    
T  18936764 catgattggtggtggtgaatactaactgcaaataatggtcgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaat 18936863  T
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgtt 18936923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 11147198 - 11147032
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| ||   |||   | | | ||||| ||||||||||||||||||||    
T  11147198 accatgattggtggtggtgaatactaacagcaaataatggttgagagagaggaggagcatttatttttcctttcttaaattatttccaaattattttaaa 11147099  T
Q  330 ataaaacaatgat-----gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11147098 ataaaacaatgacaagacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 11147032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 236 - 391
Target Start/End: Original strand, 37177714 - 37177872
Alignment:
Q  236 atgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaaata 332  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||| |||| |||| |    |||   ||| | ||||| |||||||||||||||||||||||    
T  37177714 atgattggtggtggtaaatactaactgcaaataatggttgagagagaggaggagctgttatttttcatttcttaaattatttccaaattattttaaaata 37177813  T
Q  333 aaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||    
T  37177814 aaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgtt 37177872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 18381488 - 18381555
Alignment:
Q  324 tttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||    
T  18381488 tttaaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgtt 18381555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 3102713 - 3102786
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  3102713 aattattttaaaaaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 3102786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 40534136 - 40534209
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  40534136 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 40534209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 5121000 - 5121049
Alignment:
Q  338 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggtt 387  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5121000 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtt 5121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 9231753 - 9231825
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgt 390  Q
    ||||||||||||| ||||||| || ||  ||||||||||||||||||||||||| ||||||  ||||||||||    
T  9231753 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 40534040 - 40533981
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || || |||||||||||||||||||||||||||||||||  |||||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgtt 40533981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 3102617 - 3102558
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || || |||||||||||||||||||||||||| ||||||  |||||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 3102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 13690292 - 13690233
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || || |||||||||||||||||||||||||| ||||||  |||||||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 13690233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 18936752 - 18936706
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgata 378  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata 18936706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 9231657 - 9231618
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaag 371  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaag 9231618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 21389200 - 21389039
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| ||   |||   ||| | ||||| ||||||| ||||||||||||    
T  21389200 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttatttttcatttcttaaattatttcctaattattttaaa 21389101  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||    
T  21389100 ataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 21389039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 233 - 388
Target Start/End: Original strand, 7789755 - 7789913
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattgggc---atgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| |||||       || | ||||| ||||||| |||||||||  |    
T  7789755 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcaattattttttatttcttaaattatttcctaattatttttta 7789854  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttc 388  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7789855 aaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttc 7789913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 33022341 - 33022414
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  33022341 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgtt 33022414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 7789748 - 7789685
Alignment:
Q  327 aaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||  |||||||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 7789685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 28472535 - 28472607
Alignment:
Q  319 attattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| |||| ||| | |||| ||| ||||||||||||||| ||| ||||||||||||||||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgtt 28472607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 21389209 - 21389267
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  21389209 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 21389267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 33022241 - 33022182
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 33022182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 29859723 - 29859796
Alignment:
Q  319 attattttaaaataaaacaa-tgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| |||| || | | |||| ||| ||||||||||||||| ||| ||||||||||||||||||||    
T  29859723 attattttaaaagaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgtt 29859796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 19580395 - 19580556
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattggg---catgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| || |||     ||| | ||||| |||||  |||||||||||||    
T  19580395 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttgtttttcatttcttaaattattttaaaattattttaaa 19580494  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  19580495 ataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 19580556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 36635323 - 36635484
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||| |||| || | ||   |||   ||| | ||||| ||||||| ||||||||||||    
T  36635323 accatgattggtggtggtgaatactaagtgcaaataatggttgagaaagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaa 36635422  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  36635423 ataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgtt 36635484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 11651105 - 11651018
Alignment:
Q  304 ttaaactatttccaaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||| |||||||||||    
T  11651105 ttaaattatttccaaattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgtt 11651018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 36274210 - 36274137
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  36274210 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgtt 36274137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 27073081 - 27073154
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  27073081 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 27073154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 33214534 - 33214461
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  33214534 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 33214461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 10599000 - 10599045
Alignment:
Q  347 catgttttaatttgttgtttgtaagaatgatatattaggttcgttt 392  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgttt 10599045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 10598885 - 10598826
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||||||||||||||||||||||||  ||||||  |||||||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgtt 10598826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 27072974 - 27072931
Alignment:
Q  348 atgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgtt 27072931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 33214626 - 33214685
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || |||||||||||||||||||||||||||||  |||||  |||||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgtt 33214685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 33219149 - 33219090
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||| |  |||||||||||||||||||||||||| ||||||  |||||||||||    
T  33219149 aaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 33219090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 36635303 - 36635256
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||||    
T  36635303 gtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgtt 36635256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 36274312 - 36274371
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||||||||||||||||||||||||  ||||||  |||| ||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgtt 36274371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 11651119 - 11651168
Alignment:
Q  236 atgattggtggtggtgaataccaaccgcaaataatggttgagatagagaa 285  Q
    |||||| ||||||| |||||||||||| || |||||||||||| ||||||    
T  11651119 atgattagtggtggggaataccaaccgtaagtaatggttgagagagagaa 11651168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 23346598 - 23346437
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| || | ||   |||   ||| | ||||| ||||||||||||||||||||    
T  23346598 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttccaaattattttaaa 23346499  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  23346498 ataaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgtt 23346437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 233 - 391
Target Start/End: Complemental strand, 50893142 - 50892981
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||| || | ||   |||   ||| | ||||| ||||||| ||||||||||||    
T  50893142 accatgattgatggtggtgaatactaaccgcaaataatggttgagagagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaa 50893043  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  50893042 ataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgtt 50892981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 28217615 - 28217765
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatcaattgggcatgttttaaactatttccaaattattttaaaata 332  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||| |||| |||| |||||    || |||| |  | ||   ||||||||||||||||    
T  28217615 accatgattggtggtggtgaatagtaactgcaaataatggttgagagagaggaggagcaatt----at-ttttcatttctt---aaattattttaaaata 28217706  T
Q  333 aaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  28217707 aaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgtt 28217765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 233 - 392
Target Start/End: Complemental strand, 41834053 - 41833891
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||| |  ||||||||||  || ||||||||||||||||| |||| |||| ||   |||   ||| | ||||| ||||||| ||||||||||||    
T  41834053 accatgattgataatggtgaatactgactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcctaattattttaaa 41833954  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttt 392  Q
    |||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  41833953 ataaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgttt 41833891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 233 - 392
Target Start/End: Original strand, 42180657 - 42180818
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||| |||||||||||  |||||||||||||||||||| | || |||| ||   |||   ||| | ||||| ||||| | ||||||||||||    
T  42180657 accatgattggtagtggtgaatactgaccgcaaataatggttgagagaaaggaggagcagttatttttcatttcttaaattattttctaattattttaaa 42180756  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttt 392  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  42180757 ataaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgatat-ttagattcgttt 42180818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 392
Target Start/End: Original strand, 39669149 - 39669305
Alignment:
Q  237 tgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaaataa 333  Q
    |||||| ||||||||||||  |||||||||||||||||||||  ||| |||| ||   |||   ||| |  |||| ||||||| ||||||||||||||||    
T  39669149 tgattgatggtggtgaatattaaccgcaaataatggttgaga--gaggaggagcagttatttttcatttcctaaattatttcctaattattttaaaataa 39669246  T
Q  334 aacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttt 392  Q
    |||||| | |||||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  39669247 aacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgttt 39669305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 7062099 - 7062037
Alignment:
Q  317 aaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatat 379  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7062099 aaattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatat 7062037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 48871409 - 48871483
Alignment:
Q  317 aaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| |||||||||||    
T  48871409 aaattattttaaaataaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 48871483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 50905098 - 50905009
Alignment:
Q  304 ttaaactatttccaaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatg--atatattaggttcgtt 391  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  50905098 ttaaattatttccaaataattttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgtt 50905009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 361
Target Start/End: Original strand, 4156978 - 4157109
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| ||   |||   ||| | ||||| ||||||||||||||||||||    
T  4156978 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaa 4157077  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgt 361  Q
    |||||||||||| |||  |||||||| |||||    
T  4157078 ataaaacaatgacgtgcaatgttttactttgt 4157109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 10227803 - 10227730
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||| ||  |||||||||||    
T  10227803 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgtt 10227730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 10227899 - 10227958
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  10227899 aaaataatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 10227958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 26552165 - 26552236
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcg 389  Q
    ||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||  |||||||||    
T  26552165 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcg 26552236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 28217606 - 28217548
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28217606 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgtt 28217548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 19059551 - 19059624
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||| ||| |||| ||||||  |||||||||||    
T  19059551 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgtt 19059624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 50905104 - 50905161
Alignment:
Q  337 aatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttttt 394  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  50905104 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgttttt 50905161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 19059451 - 19059392
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 19059392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 48871323 - 48871265
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  48871323 aaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgtt 48871265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 50893150 - 50893208
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  50893150 aaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgtt 50893208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 48752586 - 48752639
Alignment:
Q  337 aatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 48752639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 7062173 - 7062128
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgaga 278  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||    
T  7062173 accatgattgatggtggtgaatactaactgcaaataatggttgaga 7062128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 7062184 - 7062242
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||||||  |||||||||||    
T  7062184 aaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgtt 7062242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 23346620 - 23346666
Alignment:
Q  344 tgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgtt 23346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 48871333 - 48871388
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaagga 288  Q
    |||||||||||||||||||||||  ||| ||||||||| ||||||| |||| ||||    
T  48871333 accatgattggtggtggtgaatattaactgcaaataatagttgagagagaggagga 48871388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 4156968 - 4156922
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgata 378  Q
    |||| ||||| ||||||||||||||||| || |||||||||||||||    
T  4156968 aaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata 4156922  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 48752570 - 48752532
Alignment:
Q  235 catgattggtggtggtgaataccaaccgcaaataatggt 273  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  48752570 catgattggtggtggtgaatactaactgcaaataatggt 48752532  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 41834069 - 41834106
Alignment:
Q  338 atgatgtgtcatgttttaatttgttgtttgtaagaatg 375  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatg 41834106  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 42180641 - 42180604
Alignment:
Q  338 atgatgtgtcatgttttaatttgttgtttgtaagaatg 375  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatg 42180604  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 387
Target Start/End: Original strand, 38086052 - 38086209
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||| ||   |||   ||| | ||||| |||||| |||||||||||||    
T  38086052 accatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcaaaattattttaaa 38086151  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggtt 387  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||| |||||||    
T  38086152 ataaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtt 38086209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 391
Target Start/End: Original strand, 3671908 - 3672069
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||| ||||||||||||  |||| |||||||||||||||| |||| |||| ||   |||   ||| | ||||| ||||||||||||||||||||    
T  3671908 accatgattgatggtggtgaatagtaaccacaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaa 3672007  T
Q  330 ataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||| |||| || |||||||||||| ||||||| ||||||||||||| ||||||    
T  3672008 ataaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgtt 3672069  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 31470691 - 31470605
Alignment:
Q  304 ttaaactatttccaaattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  |||||||||||    
T  31470691 ttaaattatttcctaattattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgtt 31470605  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 42028669 - 42028596
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  42028669 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgtt 42028596  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 391
Target Start/End: Original strand, 15332844 - 15332908
Alignment:
Q  327 aaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  15332844 aaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgtt 15332908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 31860258 - 31860331
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||  |||||||||||    
T  31860258 aattattttaaaagaaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgtt 31860331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 2059657 - 2059730
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||  |||||||||||    
T  2059657 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgtt 2059730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 13280008 - 13280081
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || || |||||||||||||||||||||||||| ||||||  |||||||||||    
T  13280008 aattattttaaaagaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 13280081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 16115137 - 16115064
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||  |||||||||||    
T  16115137 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgtt 16115064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 3671897 - 3671839
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  3671897 aaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgtt 3671839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 7317808 - 7317881
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| |||| ||  ||||||||||||||||||| ||||||||||| ||||||  |||||||||||    
T  7317808 aattattttaaaagaaaaaaacaatgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgtt 7317881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 36059285 - 36059333
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  36059285 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgtt 36059333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 16115231 - 16115290
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgtt 16115290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 2059567 - 2059508
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||| ||||||| ||||| ||||||||||||||| ||||||  |||||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgtt 2059508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 13279901 - 13279858
Alignment:
Q  348 atgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgtt 13279858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 31470765 - 31470823
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||  |||||||||||    
T  31470765 aaaaaaatgatgtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgtt 31470823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 31860156 - 31860097
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    |||| ||||| |||||||||||||||||||||||| |||| ||||||  |||||||||||    
T  31860156 aaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgtt 31860097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 38086032 - 38085997
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgata 378  Q
    ||||||||||||||||||||||||||||||||||||    
T  38086032 gtgtcatgttttaatttgttgtttgtaagaatgata 38085997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 42028765 - 42028824
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || || |||||||||||||||||||||||||| ||||||  |||||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 42028824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 7317712 - 7317653
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||||||||| ||||||||| ||||| ||||||  |||||||||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgtt 7317653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 11717 - 11644
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||  |||||||||||    
T  11717 aattattttaaaagaaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgtt 11644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 11814 - 11873
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgtt 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 15913 - 15865
Alignment:
Q  343 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtt 391  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15913 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgtt 15865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 15936 - 16044
Alignment:
Q  233 accatgattggtggtggtgaataccaaccgcaaataatggttgagatagagaaggatca---attgggcatgttttaaactatttccaaattattttaaa 329  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| |||| || | ||   |||   ||| | ||||| ||||||| ||||||||||||    
T  15936 accatgattggtagtggtgaatattaaccgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttcctaattattttaaa 16035  T
Q  330 ataaaacaa 338  Q
    |||||||||    
T  16036 ataaaacaa 16044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 37619 - 37691
Alignment:
Q  318 aattattttaaaataaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgt 390  Q
    ||||||||||||| ||||||| || ||  ||||||||||||||||||||||||| ||||||  ||||||||||    
T  37619 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 37523 - 37484
Alignment:
Q  332 aaaacaatgatgtgtcatgttttaatttgttgtttgtaag 371  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaag 37484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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