View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9162_low_16 (Length: 375)

Name: NF9162_low_16
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9162_low_16
NF9162_low_16
[»] chr4 (10 HSPs)
chr4 (18-375)||(26120536-26120908)
chr4 (18-212)||(26097249-26097443)
chr4 (18-172)||(26127193-26127347)
chr4 (18-117)||(26065249-26065348)
chr4 (18-107)||(26084974-26085063)
chr4 (18-168)||(26036601-26036766)
chr4 (272-375)||(26038323-26038427)
chr4 (120-212)||(26065366-26065458)
chr4 (262-305)||(26127432-26127475)
chr4 (180-212)||(26085130-26085162)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 26120536 - 26120908
Alignment:
Q  18 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctctttaactgatgcaa 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  26120536 aatctcgggttcacggattcatcaggagcaacaataggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctgtttaactaatgcaa 26120635  T
Q  118 ta---------------tggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgnnnnnnnagctctgcatttttatctgataa 202  Q
     |               |||||||||||||||||||||| ||||||||||||||||| ||||||||||||       |||||||||||||||||||||||    
T  26120636 gaaactctttttctgtctggtctttcccttgctctgcaatccgaagcctttccgtcaactccctcaactgtttttttagctctgcatttttatctgataa 26120735  T
Q  203 aagtgccacagtttttgattcacattcagttgaattttcctacnnnnnnnnnnnnnnnntcatgtttgtgaaagaagaaagctaagagcatccaataaga 302  Q
    |||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||    
T  26120736 aagtgccacagtttttgattcacattcagttgaattttcctacaaaagaaaaaataaaatcatgtttgtgaaagaagaaagctaagagcatccaataaga 26120835  T
Q  303 actttgattactacagtggtagcgatccttgatttgcgtagagaataaggattgttttgcattaagggtcctt 375  Q
    |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26120836 actccgattactacagtggtagcgatccttgatttgcgtagagattaaggattgttttgcattaagggtcctt 26120908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 26097249 - 26097443
Alignment:
Q  18 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctctttaactgatgcaa 117  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26097249 aatcttgggttcacggattcatcaggagcaacattaggactggttcttattgccttgacagtaccaaaaggtccagctttttcctctttaactgatgcaa 26097348  T
Q  118 tatggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgnnnnnnnagctctgcatttttatctgataaaagtgccaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||    
T  26097349 tatggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgttttttcagctctgcatttttatctgataacagtgccaca 26097443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 26127193 - 26127347
Alignment:
Q  18 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctctttaactgatgcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26127193 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctctttaactgatgcaa 26127292  T
Q  118 tatggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactg 172  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26127293 tatggtctttcccttgctctgcaagccgaagcctttccctcaactccctcaactg 26127347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 26065249 - 26065348
Alignment:
Q  18 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctctttaactgatgcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  26065249 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctgtttacctaatgcaa 26065348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 26084974 - 26085063
Alignment:
Q  18 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctcttta 107  Q
    ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26084974 aatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctgttta 26085063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 26036601 - 26036766
Alignment:
Q  18 aatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctttttcctctttaactgatgcaa 117  Q
    ||||| || |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| || ||||||    
T  26036601 aatcttggattcacggattcatcaggaacaacagtaggattggttcttaatcccttgacagtaccaaaaggtccagctttttcttgtttacctaatgcaa 26036700  T
Q  118 ta---------------tggtctttcccttgctctgcaagccgaagcctttccgtcatctccctca 168  Q
     |               ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  26036701 gaaattgtttttgagcctggtctttcccttgctctgcaagccgaagcctttctgtcaactccctca 26036766  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 272 - 375
Target Start/End: Original strand, 26038323 - 26038427
Alignment:
Q  272 gaaagaagaaagctaaga-gcatccaataagaactttgattactacagtggtagcgatccttgatttgcgtagagaataaggattgttttgcattaaggg 370  Q
    |||| ||||||||||||| |||||||||||||||    ||||||||||  ||| |||||||||||||||||||||||| ||| |||||| ||||||||||    
T  26038323 gaaaaaagaaagctaagatgcatccaataagaacaccaattactacagcagtaacgatccttgatttgcgtagagaatgagggttgtttcgcattaaggg 26038422  T
Q  371 tcctt 375  Q
    |||||    
T  26038423 tcctt 26038427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 26065366 - 26065458
Alignment:
Q  120 tggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgnnnnnnnagctctgcatttttatctgataaaagtgccaca 212  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||| ||||  ||       ||||||||||||||||||||||| || ||||||    
T  26065366 tggtcttttccttgctctgcaagctgaagcctttccgtcaactcactcacttgttttttcagctctgcatttttatctgataagagcgccaca 26065458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 26127432 - 26127475
Alignment:
Q  262 tcatgtttgtgaaagaagaaagctaagagcatccaataagaact 305  Q
    |||||||| |||||||||||||||||||||||||||||| ||||    
T  26127432 tcatgtttatgaaagaagaaagctaagagcatccaataataact 26127475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 26085130 - 26085162
Alignment:
Q  180 agctctgcatttttatctgataaaagtgccaca 212  Q
    ||||||||||||||||||||||| |||||||||    
T  26085130 agctctgcatttttatctgataagagtgccaca 26085162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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