View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9162_low_17 (Length: 323)

Name: NF9162_low_17
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9162_low_17
NF9162_low_17
[»] chr2 (1 HSPs)
chr2 (1-309)||(2016369-2016679)
[»] chr7 (1 HSPs)
chr7 (145-213)||(6933247-6933315)
[»] chr5 (2 HSPs)
chr5 (145-213)||(21547757-21547825)
chr5 (145-190)||(26291919-26291964)
[»] chr4 (3 HSPs)
chr4 (145-213)||(509308-509376)
chr4 (145-213)||(18088559-18088627)
chr4 (145-212)||(9071911-9071978)
[»] chr6 (1 HSPs)
chr6 (154-213)||(30234635-30234694)
[»] scaffold0002 (1 HSPs)
scaffold0002 (158-212)||(170999-171053)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2016369 - 2016679
Alignment:
Q  1 gaagattaacctgaagtaatttcttggtcatatgtaagtacagagacggacttatgatcataagactaattgtttctatctttctataggacgcatatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2016369 gaagattaacctgaagtaatttcttggtcatatgtaagtacagagacggacttatgatcataagactaattgtttctatctttctataggatgcatatag 2016468  T
Q  101 gtgcccgtttgacgccccttannnnnnnatgtttaaaaattactattactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatg 200  Q
    |||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016469 gtgcccatttgacgccccttatttttttatgtttaaaaattactattactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatg 2016568  T
Q  201 tactcaatgtgtcaccatttataatcattgatg--gtagcactatatataacataatgtatggatcaatgaagtcacttttttctcatgttctccaataa 298  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016569 tactcaatgtgtcaccatttataatcattgatgatatagcactatatataacataatgtatggatcaatgaagtcacttttttctcatgttctccaataa 2016668  T
Q  299 aagcattatat 309  Q
    |||||||||||    
T  2016669 aagcattatat 2016679  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 6933247 - 6933315
Alignment:
Q  145 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6933247 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 6933315  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 21547757 - 21547825
Alignment:
Q  145 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21547757 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 21547825  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 26291919 - 26291964
Alignment:
Q  145 attactattgatacaatgtcacattcagtaaagatttatgatacat 190  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  26291919 attactatagatacaatgtcacattcagtaaagatttatgatacat 26291964  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 509308 - 509376
Alignment:
Q  145 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  509308 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 509376  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 18088627 - 18088559
Alignment:
Q  145 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18088627 attactatagatacaatgtcacattcagtaaagatttatgatacatgtataggatgtactcaatgtgtc 18088559  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 9071911 - 9071978
Alignment:
Q  145 attactattgatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgt 212  Q
    |||||||| |||||||||||||||| | ||||||||| ||||| ||||||| |||||| |||||||||    
T  9071911 attactatagatacaatgtcacattaaataaagatttttgatatatgtataggatgtattcaatgtgt 9071978  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 30234694 - 30234635
Alignment:
Q  154 gatacaatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgtc 213  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  30234694 gatataatgtcacattcaataaagatttatgatacatgtataggatgtactcaatgtgtc 30234635  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 170999 - 171053
Alignment:
Q  158 caatgtcacattcagtaaagatttatgatacatgtataagatgtactcaatgtgt 212  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||    
T  170999 caatgtcacattccgtaaaaatttatgatacatgtataggatgcactcaatgtgt 171053  T

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