View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_low_24 (Length: 258)
Name: NF9162_low_24
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 13478191 - 13477982
Alignment:
| Q |
11 |
gataatactgttggtaactctcatttacgtaggcttgggagatacaatttaatttggaaactcaaagttccaccaaagattaagaatttg-tgtggcgag |
109 |
Q |
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| T |
13478191 |
gataatattgttggtaactctcatttacgtagacttgggagatacaatttaatttggaaactcaaagttccaccaaagattaagaatttggtgtggcgag |
13478092 |
T |
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| Q |
110 |
tttgtcgtggttacattcccacaatatatttatcgtgtcaaactaattgtgttgtttgtagtgctaattatgaagatggaattcatgtgttgctagaatg |
209 |
Q |
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| T |
13478091 |
tttgtcgtggttactttcccacaacatatgtatcgtgtcaaactaattgtgttgtttctagtgctaattatgaagatggaattcatgtgttgctagaatg |
13477992 |
T |
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| Q |
210 |
ccgcactata |
219 |
Q |
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| T |
13477991 |
ccacactata |
13477982 |
T |
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