View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_low_25 (Length: 253)
Name: NF9162_low_25
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 36790545 - 36790321
Alignment:
| Q |
15 |
cacagaatggcttaaaa----acatgtataataatacataagacatatgaatttaatcaagaccaaaatcagagagttcctcaatataattgacactcat |
110 |
Q |
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| T |
36790545 |
cacagaatggcttaaaataaaacatgtataataatacataagacatatgaatttaatcaagaccaaaatcagagagttcctcaatataattgacactcat |
36790446 |
T |
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| Q |
111 |
tccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttgttggtattggagttaggc |
210 |
Q |
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| T |
36790445 |
tccttgaataattatgtaccgtatttccttccttacaagttaccaccatagcctcattttatgatttggttgttttagtttgttggtattggagttaggc |
36790346 |
T |
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| Q |
211 |
tataatgtctgaaactatatggctt |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
36790345 |
tataatgtctgaaactatatggctt |
36790321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 27094514 - 27094392
Alignment:
| Q |
93 |
aatataattgacactcattccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttg |
192 |
Q |
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| T |
27094514 |
aatataattgacactcattccttgaatcattgtgtacaatat----ttccttacaagttaccaccatagcctcattatgtgattttgttgttttag-ttg |
27094420 |
T |
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| Q |
193 |
ttggtattggagttaggctataatgtct |
220 |
Q |
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| T |
27094419 |
ttagtattggagttaggctacaatgtct |
27094392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 13805960 - 13805838
Alignment:
| Q |
93 |
aatataattgacactcattccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttg |
192 |
Q |
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||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||||| | ||||| |||||||||| ||| |
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| T |
13805960 |
aatataattgacactcattccttgaatcattgtgtacaatat----ttccttacaagttaccaccatagcctcattatgcgattttgttgttttag-ttg |
13805866 |
T |
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| Q |
193 |
ttggtattggagttaggctataatgtct |
220 |
Q |
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|| ||||| ||||||||||||||||||| |
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| T |
13805865 |
ttagtatttgagttaggctataatgtct |
13805838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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