View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9162_low_29 (Length: 249)
Name: NF9162_low_29
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 26038439 - 26038215
Alignment:
| Q |
11 |
gcagagaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
26038439 |
gcagagaaagagaaggacccttaatgcgaaacaaccctcattctctacgcaaatcaaggatcgttactgctgtagtaattggtgttcttattggatgcat |
26038340 |
T |
|
| Q |
111 |
cttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26038339 |
cttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttca |
26038240 |
T |
|
| Q |
211 |
tcaaagattgtagcttttgtgtttt |
235 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26038239 |
tcaaagattgtagcttttgtgtttt |
26038215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 26111918 - 26111710
Alignment:
| Q |
11 |
gcagagaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcat |
110 |
Q |
| |
|
||||||||||||||||||| || ||| |||| |||||| ||||||| || |||||||||| ||||| ||||| | ||||||||||||||||||||||| |
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|
| T |
26111918 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttattggatgcat |
26111819 |
T |
|
| Q |
111 |
cttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttca |
210 |
Q |
| |
|
| ||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| | | |||||| || | |||| |||||||||| ||||||| |
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| T |
26111818 |
catagttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26111719 |
T |
|
| Q |
211 |
tcaaagatt |
219 |
Q |
| |
|
||||||||| |
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|
| T |
26111718 |
tcaaagatt |
26111710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 26056344 - 26056136
Alignment:
| Q |
11 |
gcagagaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||| ||||||| || |||||||||| ||||| ||||| | ||||||||||||| ||||||||| |
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|
| T |
26056344 |
gcagagaaagagaaggacccttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttactggatgcat |
26056245 |
T |
|
| Q |
111 |
cttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttca |
210 |
Q |
| |
|
| ||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||| | | |||||| || | |||| |||||||||| ||||||| |
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|
| T |
26056244 |
catagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26056145 |
T |
|
| Q |
211 |
tcaaagatt |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
26056144 |
tcaaagatt |
26056136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 26068006 - 26067798
Alignment:
| Q |
11 |
gcagagaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcat |
110 |
Q |
| |
|
||||||||||||||||||| || ||| |||| |||||| ||||||| || |||||||||| ||||| ||||| | ||||||||||||| ||||||||| |
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|
| T |
26068006 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttactggatgcat |
26067907 |
T |
|
| Q |
111 |
cttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttca |
210 |
Q |
| |
|
| ||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||| | | |||||| || | |||| |||||||||| ||||||| |
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|
| T |
26067906 |
catagttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26067807 |
T |
|
| Q |
211 |
tcaaagatt |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
26067806 |
tcaaagatt |
26067798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 26121444 - 26121237
Alignment:
| Q |
12 |
cagagaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcatc |
111 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| |||| ||||||| || ||||| ||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
26121444 |
cagagaaagagaaggacgcttgatgaagaacaactctcattctctactcatatcaataatcgttaccactgtaatcattggagttcttattggatgcatc |
26121345 |
T |
|
| Q |
112 |
ttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttcat |
211 |
Q |
| |
|
||| ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| | || || ||| |||| |||| || ||||||| |||||||| |
|
|
| T |
26121344 |
ttacttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcat |
26121245 |
T |
|
| Q |
212 |
caaagatt |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
26121244 |
caaagatt |
26121237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 26128871 - 26128664
Alignment:
| Q |
12 |
cagagaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcatc |
111 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| | |||||| ||| ||||| ||| |||||||||||| | || | |||||||| |||||||||| |
|
|
| T |
26128871 |
cagagaaagagaaggacccttgatgaagaacaacccttattctctaagcatatcaaagattgttaccgctgtaatcatagtagttcttactggatgcatc |
26128772 |
T |
|
| Q |
112 |
ttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttcat |
211 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||||||||| ||||| |||| ||||| | || || ||| |||| |||| |||||||||| ||||||| |
|
|
| T |
26128771 |
atagttttcttttttcctaatgacttctttgcttctcaatccattacctcaattcgtctcttcccttttgctggacccaagacccaggtttctttttcat |
26128672 |
T |
|
| Q |
212 |
caaagatt |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
26128671 |
caaagatt |
26128664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 26085581 - 26085379
Alignment:
| Q |
11 |
gcagagaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcat |
110 |
Q |
| |
|
||||||||||||||||||| || ||| |||| |||||| ||||||| || |||||||||| ||||| ||||| | |||||||||||| ||||||||| |
|
|
| T |
26085581 |
gcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcat |
26085482 |
T |
|
| Q |
111 |
cttagctttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttca |
210 |
Q |
| |
|
| ||| ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| | | |||||| || | |||| |||||||||| ||||||| |
|
|
| T |
26085481 |
catagttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttca |
26085382 |
T |
|
| Q |
211 |
tca |
213 |
Q |
| |
|
||| |
|
|
| T |
26085381 |
tca |
26085379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 26120916 - 26120805
Alignment:
| Q |
15 |
agaaagagaaggacccttaatgcgaaacaaccctcagtctctacgcaaatcaaggatcgttaccgctgtagtaattggagttcttattggatgcatctta |
114 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||| | |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
26120916 |
agaaatagaaggacccttaatgcaaaacaatccttaatctctacgcaaatcaaggatcgctaccactgtagtaatcggagttcttattggatgc-tctta |
26120818 |
T |
|
| Q |
115 |
gctttcttttttc |
127 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
26120817 |
gctttcttctttc |
26120805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 26065603 - 26065545
Alignment:
| Q |
92 |
gagttcttattggatgcatcttagctttcttttttcctaatggcttctttgtttctcaa |
150 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
26065603 |
gagttcttataggatgcatcttagctttcttttttcccaatgacttctttgtttctcaa |
26065545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 26097582 - 26097532
Alignment:
| Q |
97 |
cttattggatgcatcttagctttcttttttcctaatggcttctttgtttct |
147 |
Q |
| |
|
||||| |||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
26097582 |
cttataggatgcatcttagctttctttttttccaatggcttctttgtttct |
26097532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 26056610 - 26056652
Alignment:
| Q |
121 |
ttttttcctaatggcttctttgtttctcaatctattacatcaa |
163 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
26056610 |
ttttttcctaatgacatctttgtttctcaatctattacctcaa |
26056652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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