View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9162_low_32 (Length: 241)
Name: NF9162_low_32
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_32 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 10327562 - 10327333
Alignment:
| Q |
12 |
caagaaacataaagaaaatgcgtgcaactaaagtttctatggtttctactacttctgcatcgtctccaacagagcattaatcccatcatttgtctgatct |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10327562 |
caagaaacataaagaaaatgtgtgcaactaaagtttctatggtttctactacttctgcatcatctccaacagagcattaatcccatcatttgtctgatct |
10327463 |
T |
|
| Q |
112 |
tgcttctttgccatatgtgcttgagtcttagccatttcagcttgctccttctctatctgataatgcttagctaaaaactcagtgtgatgcttctacannn |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10327462 |
tgcttctttgccatatgtgcttgagtcttagccatttcagcttgctccttcactatctgataatgcttagctaaaaactcagtgtgatgcttctacattt |
10327363 |
T |
|
| Q |
212 |
nnnnatccagcttttcttgtttcctgactt |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
10327362 |
ttttatccagcttttcttgtttcctgactt |
10327333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University