View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_low_37 (Length: 215)
Name: NF9162_low_37
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 28179481 - 28179574
Alignment:
| Q |
103 |
gaatgaatacattcatgcaattattttcactaccaactaatttgatcttctattagatttatagtattcaaggctcaatcaatgtagaaccgta |
196 |
Q |
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| T |
28179481 |
gaatgaatacattcatgcaattattttcactaccaactaatttgatcttctattagatttatagtattcaaggctcaatcaatgtagaaccgta |
28179574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 30126944 - 30127104
Alignment:
| Q |
1 |
ctctggcttggaacttctgttccagccatttgagtgtccgttttcactatgtcatccccatgatgcagtttct--cccacatgtgtcatacactcatgct |
98 |
Q |
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| T |
30126944 |
ctctggcttggaacttttgttccagccatttgagtgtccgttttcactatgttatccccgtgaagcagtttctcacccacatgtgtcaaa--------ct |
30127035 |
T |
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| Q |
99 |
gttagaatgaatacattc--atgcaattattttcactaccaactaatttgatcttctattagatttata |
165 |
Q |
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| T |
30127036 |
gttagaatgaatacattcatatgtaattattttcactaccaactaatatgattttcgattagatttata |
30127104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 30117384 - 30117546
Alignment:
| Q |
1 |
ctctggcttggaacttctgttccagccatttgagtgtccgttttcactatgtcatccccatgatgcagtttct--cccacatgtgtcatacactcatgct |
98 |
Q |
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| T |
30117384 |
ctctggcttggaacttttgttccagccatttgagtgtccgttttcactatgttatccccgtgaagcagtttctcacccacatgtgtcaaaca-------- |
30117475 |
T |
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| Q |
99 |
gttagaatgaatacattc--atgcaattattttcactaccaacta--atttgatcttctattagatttata |
165 |
Q |
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| T |
30117476 |
attagaatgaatacattcatatgtaattattttcactaccaactaatatatgattttcgattagatttata |
30117546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 30134528 - 30134617
Alignment:
| Q |
2 |
tctggcttggaacttctgttccagccatttgagtgtccgttttcactatgtcatccccatgatgcagtt--tctcccacatgtgtcatac |
89 |
Q |
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| T |
30134528 |
tctggcttggaacttctgttccagacatatgggggtccgttttcactatgtcttccccatgacccggttgctctcccacttgtgtcatac |
30134617 |
T |
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