View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_low_4 (Length: 853)
Name: NF9162_low_4
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 18 - 711
Target Start/End: Complemental strand, 49369947 - 49369247
Alignment:
| Q |
18 |
atttcaaagaaaaagcccttggcaattttggaagaaaaaacagttatacaaaattaaacattaaacattccagacatgaataaatttccaagaaaaatcc |
117 |
Q |
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| T |
49369947 |
atttcaaagaaaaagcccttggcaattttggaagaaaaaacagttaaacaaaattaaacattaaacattccagacatgaataaatttcgaagaaaaatcc |
49369848 |
T |
|
| Q |
118 |
ctttggagttttgtggaattgaggggtgtacaaagtggcagacatttatcagtatattacctgatcttgcttggacttcgtaatggatagaagcggacaa |
217 |
Q |
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| T |
49369847 |
ctttggagttttctggaattgaggggtgtacaaaatggcagacatttatcagtatattacctgatcttgcatggacttcgtaatggatagaagcggacaa |
49369748 |
T |
|
| Q |
218 |
gttagaacccttttgatcagccctttcagttccctagcactattttttcagactgtttctcaattccctcctatatgcttgcttaagtcggtcaaaatac |
317 |
Q |
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| T |
49369747 |
gttagaacccttttgatcagccctttcagttccctagcactattttttcagactgtttctcaattcccaactatatgcttgcttaagtcggtcaaaatac |
49369648 |
T |
|
| Q |
318 |
actatcggaagcacacttccgcgccaaacccctcgcagttttagaggacagattgac----------ttttgtagggcctgaacaaatgttggtctgctt |
407 |
Q |
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| T |
49369647 |
actatcggaagcacacttccgcgccaaacccctcgcagttttagaggacagattgacgaattgtcttttttgtagggcctgaacaaatgttggtctg--- |
49369551 |
T |
|
| Q |
408 |
cttcttcgacctctttcaattgtgttattgtctcatattatcagtcttgtaactttaacgcatgtaggtaaattgtgcattctatcttcgttggattgat |
507 |
Q |
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| T |
49369550 |
cttcttcgacctctttcaattgtgttattgtctcatgttatcagtgttgtaactttaacgcatgtaggtaaattttgcattctatcttcgttggattgat |
49369451 |
T |
|
| Q |
508 |
tgttaaatagtctgatgtaataatttgttgagtcaccttgctctgcataatccctaatttgatatagggggcatattaaatgagaaaacataatttatat |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49369450 |
tgttaaatagtctgatgtaataatttgttgagtcaccttgctctgcataatccctaatttgatatagggggcatattaaatgagaaaacatattttatat |
49369351 |
T |
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| Q |
608 |
cgaaagtgagaggagcaattttcatccatcaaatcaaattgactggtttaagaattaagatatataatcacattgtgccaatgtgtcctccttatcgtgt |
707 |
Q |
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| T |
49369350 |
cgaaagtgagaggagcaattttcatccatcaaatcaaattgactggtttaagaattaagatatataatcacattgtgccaatgtttcctccttatcgtgt |
49369251 |
T |
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| Q |
708 |
ttac |
711 |
Q |
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|||| |
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| T |
49369250 |
ttac |
49369247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 742 - 841
Target Start/End: Complemental strand, 49369216 - 49369117
Alignment:
| Q |
742 |
tatctctattctctcatagacgaagataattctgaccgacatacccaccagtatcaacgatgatttgactaccgttgccacaattgcaattgattctctg |
841 |
Q |
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| T |
49369216 |
tatctctattctctcatagacgaagataattctgaccgacataaccaccagtatcaacgatgatttgactaccgttgccacaattgcaattgattctctg |
49369117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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